PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G089100.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 481aa    MW: 54246.9 Da    PI: 5.3937
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G089100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.96.8e-13134156426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         e C f+++tGtCk+G +CkF+H+
  Potri.015G089100.1 134 EDCAFYMKTGTCKFGVNCKFNHP 156
                         89********************9 PP
2zf-CCCH31.92.3e-10179202225
                         -S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                         ++ +C++++rtG CkyG  C+F+H
  Potri.015G089100.1 179 GQTECKYYLRTGGCKYGKACRFNH 202
                         6789******************** PP
3zf-CCCH35.51.7e-11233257226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +++ C f++r+G CkyG++Ck++H+
  Potri.015G089100.1 233 GEKQCEFYMRNGSCKYGATCKYNHP 257
                         6788********************9 PP
4zf-CCCH25.91.7e-08368393227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++ lC++f+++G Ck+ ++Ck++H++
  Potri.015G089100.1 368 GQQLCSYFMKFGDCKFKSNCKYHHPK 393
                         788*********************96 PP
5zf-CCCH35.71.4e-11417438526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C++++r+G+Ck+G+ CkF H+
  Potri.015G089100.1 417 ICSYYSRYGICKFGPACKFDHS 438
                         8********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.22E-6129158IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-6130157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.089130158IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-10134156IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-5136155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878177205IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-5177204IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-8179202IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6180206IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5183205IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5231258IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.263231259IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-9233257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-6233258IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4236256IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-4366393IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.615366394IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-6368393IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-5369395IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-5412439IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.68412440IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5414440IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4417439IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-9417438IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MEQQIELPIQ IQTEIPQLGL QPSSSPHSSH PGTSPSSEPD QTAQDDDNYL HQELQNQLDL  60
REEFKELNDF HEEEEEEEEF KSEERDKKSE FFYENDNESS EKEGDDLEKK NERSDENANN  120
NRRYHQYPVR PEAEDCAFYM KTGTCKFGVN CKFNHPVRRK NQAVKENVKE REEATEKPGQ  180
TECKYYLRTG GCKYGKACRF NHTREKTFSV PPLKTPMPSI LELNFLGLPI RPGEKQCEFY  240
MRNGSCKYGA TCKYNHPDPM AVGGSDLTSA FVNGGTTSLP APSPSSVGSW SSPRALNDPT  300
PFVPYVFSPT RLPSQSSEWN GYQGTLYPPE RSLHPPPSYA MSNPATESNV YAPQQQQTVV  360
DEFPERPGQQ LCSYFMKFGD CKFKSNCKYH HPKNRIPKSP SLTLSDKGLP LRPDQIICSY  420
YSRYGICKFG PACKFDHSIQ PPSSGSGDDQ HTAFGNSVTQ EKARMAESGN GSDISVEQPV  480
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G089100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2233370.0CU223337.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024442496.10.0zinc finger CCCH domain-containing protein 67 isoform X1
SwissprotQ9STM41e-129C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A2K1XK950.0A0A2K1XK95_POPTR; Uncharacterized protein
STRINGPOPTR_0012s09400.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Representative plantOGRP9141714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-127C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]