PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G089000.1
Common NamePOPTR_0015s10040g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 1645aa    MW: 186251 Da    PI: 9.0467
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G089000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.0008215281553123
                          EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                          y+C    C++sF +k +L  H r+ +
  Potri.015G089000.1 1528 YQCDidGCTMSFGSKQELAMHKRNiC 1553
                          99********************9877 PP
2zf-C2H212.80.0003715531575323
                          ET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                          Cp   Cgk F ++ +L++H r+H
  Potri.015G089000.1 1553 CPvkGCGKKFFSHKYLVQHRRVH 1575
                          9999*****************99 PP
3zf-C2H211.60.0008516111637123
                          EEET..TTTEEESSHHHHHHHHHH..T CS
             zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                          y+C    Cg++F+  s++ rH r+  H
  Potri.015G089000.1 1611 YVCAeeGCGQTFRFVSDFSRHKRKtgH 1637
                          89********************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005454.8E-141554IPR003349JmjN domain
PROSITE profilePS5118313.4951657IPR003349JmjN domain
PfamPF023753.8E-141750IPR003349JmjN domain
SuperFamilySSF511974.39E-27106163No hitNo description
SMARTSM005587.3E-50182351IPR003347JmjC domain
PROSITE profilePS5118433.91182351IPR003347JmjC domain
SuperFamilySSF511974.39E-27200365No hitNo description
PfamPF023738.4E-37215334IPR003347JmjC domain
Gene3DG3DSA:3.30.160.602.9E-415221550IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355815281550IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.38315511580IPR007087Zinc finger, C2H2
SMARTSM003550.004515511575IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.88E-615521587No hitNo description
Gene3DG3DSA:3.30.160.602.2E-515521579IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028015531575IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-915801605IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.61415811610IPR007087Zinc finger, C2H2
SMARTSM003550.001415811605IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028015831605IPR007087Zinc finger, C2H2
SuperFamilySSF576674.52E-1015911635No hitNo description
Gene3DG3DSA:3.30.160.603.7E-1016061634IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.8516111637IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.46816111642IPR007087Zinc finger, C2H2
PROSITE patternPS00028016131637IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0040010Biological Processpositive regulation of growth rate
GO:0045815Biological Processpositive regulation of gene expression, epigenetic
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
GO:0071558Molecular Functionhistone demethylase activity (H3-K27 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 1645 aa     Download sequence    Send to blast
MAAPKVCQWL KNLPLAPEYR PTLSEFQDPI AYIFKIEKEA SQYGICKIIP PVLPSAKKTT  60
LSNLNRSLCA RNGGSSAPTF TTRQQQIGFC PRKPRPVQKP VWQSGETYTF QEFETKARTF  120
EKNYLKKFFK KGALSPLEIE TLYWKATLDK PFSVEYANDM PGSAFSPRKK EGQGGVAGEG  180
MSVGDTEWNM RGVSRAKGSL LRFMKEEIPG VTSPMVYVGM MFSWFAWHVE DHDLHSLNYM  240
HMGAGKTWYG VPREAAVAFE EVVRVHGYGG EINPLVTFAV LGEKTTVMSP EVFISAGVPC  300
CRLVQNAGEF VVTFPRAYHS GFSHGFNCGE AANIATPEWL MVAKDAAIRR ASINYPPMVS  360
HFQLLYDLAL EFCTRIPMNI IAKPRSSRLK DKQKGEGEML VKEQFVKNMI QNNDLLHILG  420
KGSSVVLLPR GSSDISVCSK LRVGSQLRDN PTLGLCSQKD VMKSSKSSGS GDILQDKNQE  480
INQVKGIFSV KAKFASLCER NRFSTLNGNE CSQSMNIGTE RGRSIHGDKL SDQRLFSCVT  540
CGILSFDCLA IIQPKEAASR YLMSADCSFF NDWAVGSGVT RDVFAVAGGI ANISEQNSSR  600
WVEKNTAAGF YDVPVQSPNY QIQMADQGVE VASSSAKQLE ASALGLLALN YGNSSDSEED  660
QVEADLSHHD EINMTNCPLE NKYQCQSSAF PSYKQKDYDA ATGGLPQSPS RLDERDDVPL  720
KANDMNPEHG DRRDDFKDKT DECSFGFPTG NLASIESNSL DGRYRDPMSM SHVSLNCSPI  780
VHDIEKTKFN RPIAPIENPD MPFTQRSDKD SSCMHVFCLE HAVEIEQQLR QIGGVHILLL  840
CHPEYPRIEG EAKLVSEELG IDHLWNDITF RDAAKEDEER IQSALDSEEA IPGSGDWAVK  900
LGINLFFSAN LSRSPFYSKQ MPYNSVIYNA FGLASSVSST PKFKVYGRRS GKPKKVVAGK  960
WCGKVWMSNQ VHPFLVISDH VDQDHEQEQE RSFHASATPD EKLEKKPQTS NKTETTRKSG  1020
RKRKITAGSR SIKKVKCLEA EEPDSEDSMG DNCHRQRVRC RRKWAKSVES DDAVSDDPLA  1080
EHVRQQYRRM RRSKQAKSIK RENTVSYASV ENKFQKQLKR AHRSDRAKFF ERRSAASDNS  1140
LDDNSDQWHE RAPRSTQAKY TESEDAFSDD SPEESSRWLH GRVPKSKQLK YIDKEGVISD  1200
DSMESDSHQH NRRVSRGKRA QLIKRNDVVS DDSLDESAYQ RLPRFSRSKL AKLIERENAV  1260
SDDSLDDNIH QHHGRVLKSK QAKFVEGEDA ISDDSHEDNT DWQRKRIPRS KMAKFVESED  1320
AASDDLQEDD THEHRRRIPK SKKMNFIERE VVISDDLWEN NTHRHPRKAP RSKQARFIER  1380
EDLVSDDLLE DNSDQQQKRI LRSKQKKSAT LCQMKQGTRK PKHIAPKMIK KETLKLIKQE  1440
RQIKQETPQQ RIGKSELNAR QFDSHSEEGV EGGPSTRLRK RPSKPPKQLE TKLKEKQQNS  1500
RKKLKDASAV KAPVGRKNVK IKDEEAEYQC DIDGCTMSFG SKQELAMHKR NICPVKGCGK  1560
KFFSHKYLVQ HRRVHIDDRP LKCPWKGCKM TFKWAWARTE HIRVHTGERP YVCAEEGCGQ  1620
TFRFVSDFSR HKRKTGHSAK KSRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A2e-7883657346Transcription factor jumonji (Jmj) family protein
6ip4_A2e-7883657346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
114781504RKRPSKPPKQLETKLKEKQQNSRKKLK
214911502KLKEKQQNSRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.124950.0bud| catkin
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves and flag leaves. Expressed at low levels in roots, shoots, stems and panicles. {ECO:0000269|PubMed:24280387}.
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G089000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024442279.10.0lysine-specific demethylase REF6
SwissprotQ5N7120.0JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLA0A2K1XK920.0A0A2K1XK92_POPTR; Uncharacterized protein
STRINGPOPTR_0015s10040.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56483250
Representative plantOGRP44011217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]