PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.015G065400.4

Common Name

POPTR_0015s07640g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

HD-ZIP

Protein Properties

Length: 269aa MW: 30935 Da PI: 4.3801

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.015G065400.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.9	1.9e-19	40	93	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ Fe ++++ e++ +LAk lgL+ rqV +WFqNrRa++k Potri.015G065400.4 40 KKRRLTVDQVQFLEKSFELENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 93 56689************************************************9 PP
2	HD-ZIP_I/II	129.4	1.4e-41	39	130	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ +qv++LE+sFe e+kLeperK +la++Lglqprqva+WFqnrRAR+ktkqlEkdy++L+++y++lk++ ++L ke+e+L++e+ Potri.015G065400.4 39 EKKRRLTVDQVQFLEKSFELENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQSSYNSLKADYDNLLKEKEKLKAEV 129 69**************************************************************************************998 PP HD-ZIP_I/II 92 k 92 + Potri.015G065400.4 130 N 130 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.27E-20	23	97	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.394	35	95	IPR001356	Homeobox domain
SMART	SM00389	2.3E-19	38	99	IPR001356	Homeobox domain
Pfam	PF00046	8.3E-17	40	93	IPR001356	Homeobox domain
CDD	cd00086	9.00E-18	40	96	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.5E-20	42	103	IPR009057	Homeodomain-like
PRINTS	PR00031	1.0E-5	66	75	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	70	93	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.0E-5	75	91	IPR000047	Helix-turn-helix motif
Pfam	PF02183	5.8E-17	95	136	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001558	Biological Process	regulation of cell growth
GO:0009637	Biological Process	response to blue light
GO:0009651	Biological Process	response to salt stress
GO:0009965	Biological Process	leaf morphogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MMSFEDVHQA NGSTRPFFRS FDHEDNGDDD LDEYFHQPEK KRRLTVDQVQ FLEKSFELEN 60 KLEPERKIQL AKDLGLQPRQ VAIWFQNRRA RWKTKQLEKD YDVLQSSYNS LKADYDNLLK 120 EKEKLKAEVN LLTDKLLLKE KEKGISELSD KDALSQEPPK RAIADSASEG EVSKISTVAC 180 KQEDISSAKS DIFDSDSPHY ADGVHSSLLE AGDSSYVFEP DQSDLSQDEE DNFSKSLLPP 240 YVFPKLEDDD YSDPPASFED HAFWSWSY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	87	95	RRARWKTKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.17274	0.0	leaf\| stem

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00323	DAP	Transfer from AT3G01470	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.015G065400.4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF147822	0.0	EF147822.1 Populus trichocarpa clone WS0125_E07 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002321530.2	0.0	homeobox-leucine zipper protein HAT5
TrEMBL	A9PHH0	0.0	A9PHH0_POPTR; HD-ZIP family protein
STRING	POPTR_0015s07640.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	2e-40	homeobox 1

Link Out ? help Back to Top
Phytozome	Potri.015G065400.4
Entrez Gene	7474839

Publications ? help Back to Top
Ralph SG, et al. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. BMC Genomics, 2008. 9: p. 57 [PMID:18230180]