PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G050500.1
Common NamePOPTR_0015s03140g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 403aa    MW: 46070.4 Da    PI: 6.7843
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G050500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.41.5e-391272813135
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssasec....... 73 
                          kkdrhski T++g+RdRR+Rls+++a++fFdLqd+L fdk+skt+eWLl+qa ++ik+l +              s+ss sec       
  Potri.015G050500.1 127 SKKDRHSKINTAQGPRDRRMRLSLKVAREFFDLQDKLRFDKASKTVEWLLTQARTEIKKLSSGfpvmnyscsvgtkSASSTSECevlseih 217
                         69*****************************************************************999999876555556775554433 PP

                 TCP  74 .eaesssssasnsssg...........kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135
                          +        s+ + +           k+++   +s+ s++++a  + +akesr+kar+rarert+ek r +++
  Potri.015G050500.1 218 iD--------STLKVSsvskgksslcvKKERR--TSRASSSRKALLNPFAKESREKARERARERTKEKLRSRSR 281
                         21........2111113334445443322222..44555555555678899*****************998865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.7E-42127277IPR005333Transcription factor, TCP
PROSITE profilePS5136933.281128186IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137012.125258275IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MFPLSNNGND PMSYNDQQAY NMPFFSDIIS NSKQYVPPPL SFCHLPSPFF AYDQLELEDH  60
SIFLQQNYDL LLHQQPLRTA ATSTTPSQST VVNNMVDYNK NDVIEITEIC NKQSNSSTDQ  120
IPRKRSSKKD RHSKINTAQG PRDRRMRLSL KVAREFFDLQ DKLRFDKASK TVEWLLTQAR  180
TEIKKLSSGF PVMNYSCSVG TKSASSTSEC EVLSEIHIDS TLKVSSVSKG KSSLCVKKER  240
RTSRASSSRK ALLNPFAKES REKARERARE RTKEKLRSRS RSLDESKLCE LEAVNDEFNQ  300
FAGCWSPFET GDQESGTHNI NPSLEVQLAE AEVPFYQEQE QEQLDTREGM IDETLVNMGK  360
WSPSLPNHPH KNGIPQENQF TDFQYPLYKT WDHEAYNIDG MC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G050500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322035.20.0transcription factor TCP12
RefseqXP_024442245.10.0transcription factor TCP12
TrEMBLB9IDZ90.0B9IDZ9_POPTR; Uncharacterized protein
STRINGPOPTR_0015s03140.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.19e-20TCP domain protein 12