PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G023200.1
Common NamePOPTR_0015s06070g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 364aa    MW: 40840.1 Da    PI: 4.8863
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G023200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.13e-20129178255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +++GVr+++ +g+W+AeIrdp     r +r +lg+++taeeAa+ +++a+ kl+g
  Potri.015G023200.1 129 KFRGVRQRP-WGKWAAEIRDPA----RrQRLWLGTYDTAEEAARVYDNAAIKLRG 178
                         89*******.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-30128185IPR001471AP2/ERF domain
PfamPF008471.5E-13129178IPR001471AP2/ERF domain
SMARTSM003801.3E-38129192IPR001471AP2/ERF domain
CDDcd000185.60E-34129185No hitNo description
PROSITE profilePS5103224.171129186IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-21129185IPR016177DNA-binding domain
PRINTSPR003672.1E-10130141IPR001471AP2/ERF domain
PRINTSPR003672.1E-10152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MIDQSILCPI KYTEHKKVTK QFTKPSLKPK KLPSDDRCRL LEPSNPQPRL VRVTVTDHDA  60
TDSSSDEEGG LFGRQRVKRY VNEINIQASC KETNAITTAV ANNRKRGVGD IPQRPAKKSA  120
PQSTNNGRKF RGVRQRPWGK WAAEIRDPAR RQRLWLGTYD TAEEAARVYD NAAIKLRGPD  180
ALTNFITPPS REEEQEQEKS TVEEREGEEK KKPEINVDTV SGSGYESADE SHSLSSPKSV  240
LTFRLPSAES HKPPAHPFHE VEKEPSYQDN QEAFGESNST DYLPLDAPFL DDFFNFGTSG  300
PTLFDDQVMA TATTSVFEES FMSNQDFGDI FLDPLQDFSS LSSVCQEDDD FFHFLNSEPL  360
AAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-20127185362ATERF1
3gcc_A5e-20127185362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G023200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1968130.0AC196813.1 Populus trichocarpa clone Pop1-114I2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006374325.20.0ethylene-responsive transcription factor CRF4
TrEMBLA0A2K1XGV70.0A0A2K1XGV7_POPTR; Uncharacterized protein
STRINGPOPTR_0015s06070.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-67cytokinin response factor 4