PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G020000.1
Common NamePOPTR_0015s02170g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 360aa    MW: 40595.1 Da    PI: 8.5332
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G020000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.92.7e-55171431129
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeel+++yL kkv + ++++ ++i +vd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke
  Potri.015G020000.1  17 LPPGFRFHPTDEELISHYLYKKVLDITFSA-KAIGDVDLNKSEPWELPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKE 106
                         79**************************99.88***************888999************************************* PP

                 NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                         +++ ++ lvg+kktLvfykgrapkg kt+Wvmheyrle
  Potri.015G020000.1 107 IYR-GKFLVGMKKTLVFYKGRAPKGGKTNWVMHEYRLE 143
                         ***.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-6413167IPR003441NAC domain
PROSITE profilePS5100559.31517167IPR003441NAC domain
PfamPF023652.7E-2918142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MENISGLGKE GDDQMDLPPG FRFHPTDEEL ISHYLYKKVL DITFSAKAIG DVDLNKSEPW  60
ELPWKAKMGE KEWYFFCVRD RKYPTGLRTN RATEAGYWKA TGKDKEIYRG KFLVGMKKTL  120
VFYKGRAPKG GKTNWVMHEY RLEGKFSVHN LPKTAKNEWV ICRVFQKSSA GKKTHISGLV  180
RLGSFSNEFS PSGLPPLMDS SPYNCKIKPV AESAYVPCFS NPINVQRNQQ DTIDSFDNHL  240
LAFSTNPLEV FPRIPLLNPF YTPQAVPVSG NLQYPGSVLM QDHSILRALI ANQGTNMKQQ  300
SFKIERDMVG VSQDSTTDMN TEIYSVISNL EVGKRSGDDQ DATPSTLVAS TDLDSFWNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-541417317174NAC domain-containing protein 19
3swm_B2e-541417317174NAC domain-containing protein 19
3swm_C2e-541417317174NAC domain-containing protein 19
3swm_D2e-541417317174NAC domain-containing protein 19
3swp_A2e-541417317174NAC domain-containing protein 19
3swp_B2e-541417317174NAC domain-containing protein 19
3swp_C2e-541417317174NAC domain-containing protein 19
3swp_D2e-541417317174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G020000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321447.10.0NAC domain-containing protein 100
SwissprotQ9FLJ21e-156NC100_ARATH; NAC domain-containing protein 100
TrEMBLB9IDX40.0B9IDX4_POPTR; Uncharacterized protein
STRINGPOPTR_0015s02170.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-159NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]