PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G002900.1
Common NamePOPTR_0015s00520g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 419aa    MW: 47097.9 Da    PI: 4.1283
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G002900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM76.56.3e-2481391127
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv.ePwdLpk...kvkaeekewyfFskrdkkyat.gkrknratk..sgyW 83 
                         lppG++F Ptdeel+ +yL +kv+g    e ++ +k+ +iy   ePw++      +k++++ +yfF++ +kk+ +  k+knr++    g+W
  Potri.015G002900.1   8 LPPGYKFLPTDEELIGFYLDRKVNGGLpAEYASLFKDYNIYGEeEPWEIFDrfeGHKSGDNGLYFFTTLSKKTVNcTKNKNRKVGknGGTW 98 
                         79*********************99873555566******97549****63244666788899*****999998746677775433489** PP

                 NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                         +  g  +ev +++g+++g+k+ + + ++r+p+  +  W+m +y 
  Potri.015G002900.1  99 HGDGG-EEVSTREGAVIGMKNRFRYKNKRQPN--HDGWIMLQYG 139
                         **999.5666669************9888888..99******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-256140IPR003441NAC domain
PROSITE profilePS5100527.2488155IPR003441NAC domain
PfamPF023651.1E-179138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MQNSPSRLPP GYKFLPTDEE LIGFYLDRKV NGGLPAEYAS LFKDYNIYGE EEPWEIFDRF  60
EGHKSGDNGL YFFTTLSKKT VNCTKNKNRK VGKNGGTWHG DGGEEVSTRE GAVIGMKNRF  120
RYKNKRQPNH DGWIMLQYGS ELISENIVIS QLKTKESKKR KLMDLSEIVG VAEDEDIIQI  180
SQRFKNLPVI NSEPTRSQDQ QPHQIIQNQE TWLEAATAPV QNMEPELSAI VNRGAKLSQD  240
QELQQIAENV DTWLQAGVDS WEDDAGCATE DSFTNIDPAA QVEPGQVNFT KEPTVTENLE  300
TELEAGIVRK EDGVVEDEDI FHDLTDIVSN ELAFQVGPDQ QLDFIQESTI SENQQMALAS  360
FNNDHAKETI SDKLDDIEMA DYLESIFNGY HISQIIQDLD QFMPSLDDSP AEESGDGA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151160LKTKESKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G002900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321355.20.0NAC domain-containing protein 86
TrEMBLB9IDF80.0B9IDF8_POPTR; Uncharacterized protein
STRINGPOPTR_0015s00520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14731213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.18e-15vascular related NAC-domain protein 7