PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.014G167000.1

Common Name

POPTR_0014s16500g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 687aa MW: 79495.2 Da PI: 6.3342

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.014G167000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.8	8.5e-24	65	156	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHe 88 ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke ++w+v+++++ HnHe Potri.014G167000.1 65 EYYSNFARKNGFSIRKARSTESQHLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSIRCGCDAKLYLTKEIvdgLAQWYVSQFSNVHNHE 154 69******************9998.**************************************998756679*********** PP FAR1 89 la 90 l Potri.014G167000.1 155 LL 156 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-21	65	156	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.0E-24	288	381	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.433	559	595	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.6E-7	565	594	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.4E-4	570	597	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence Send to blast
MKPSNNIWIR RQQCPCGDWK CYIKYEGDDQ TSASSQLGRS ETTSTELVFT PYVGQIFKSD 60 DDAFEYYSNF ARKNGFSIRK ARSTESQHLG IYRRDFVCYR SGFNQPRKKA NVEHPRDRKS 120 IRCGCDAKLY LTKEIVDGLA QWYVSQFSNV HNHELLEDDQ VRLLPAYRKI QEADQERILL 180 LSKAGFPINR IVKVLELEKG VQPGHFPFIE KDVRNFVRTC KKTVQENDAL LTEKRENDTL 240 ELLEACKSVA ERDPDFAYDY TTDENQKVEN IAWLYGDSVR AYTLYGDVVT FDTTYRSITY 300 GLLLGVWFGM DNHGKAILYG CVLLQDESSH SFTWALQTFV RFIKGRHPQT IITDMELALR 360 DAIARELPNT KHVVCIWHIL SKLSSWLSFP LGSRFEDFKA EFDLLCHEEN VEDFEHQWNL 420 LVARFELVTD KHMALLFSYR GFWSISYIRG SFLARTMAPE FSQSLHTFLK RILGGQTCLQ 480 ASFEQIGLAA TVGNQTRDGT PYMHIKTCLP IEEHARSVLT PYAFNVLQHE IVLSLQYAIQ 540 EMADGSYLVQ HIKKMDGERF VNWMPEDEQI HCSCKEFEHS GILCRHSLRL LEVKNYFQLP 600 ERYFPLRWRR DQSLVPMDDQ NAQSNNDECA QAFHALAEAL LTESLISKER FNHVQREITG 660 LLAEVRSMPV AEELSLNIPP NNVSET*

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence Send to blast

MKPSNNIWIR RQQCPCGDWK CYIKYEGDDQ TSASSQLGRS ETTSTELVFT PYVGQIFKSD  60
DDAFEYYSNF ARKNGFSIRK ARSTESQHLG IYRRDFVCYR SGFNQPRKKA NVEHPRDRKS  120
IRCGCDAKLY LTKEIVDGLA QWYVSQFSNV HNHELLEDDQ VRLLPAYRKI QEADQERILL  180
LSKAGFPINR IVKVLELEKG VQPGHFPFIE KDVRNFVRTC KKTVQENDAL LTEKRENDTL  240
ELLEACKSVA ERDPDFAYDY TTDENQKVEN IAWLYGDSVR AYTLYGDVVT FDTTYRSITY  300
GLLLGVWFGM DNHGKAILYG CVLLQDESSH SFTWALQTFV RFIKGRHPQT IITDMELALR  360
DAIARELPNT KHVVCIWHIL SKLSSWLSFP LGSRFEDFKA EFDLLCHEEN VEDFEHQWNL  420
LVARFELVTD KHMALLFSYR GFWSISYIRG SFLARTMAPE FSQSLHTFLK RILGGQTCLQ  480
ASFEQIGLAA TVGNQTRDGT PYMHIKTCLP IEEHARSVLT PYAFNVLQHE IVLSLQYAIQ  540
EMADGSYLVQ HIKKMDGERF VNWMPEDEQI HCSCKEFEHS GILCRHSLRL LEVKNYFQLP  600
ERYFPLRWRR DQSLVPMDDQ NAQSNNDECA QAFHALAEAL LTESLISKER FNHVQREITG  660
LLAEVRSMPV AEELSLNIPP NNVSET*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.014G167000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002321197.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_024441403.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_024441404.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	B9IAT4	0.0	B9IAT4_POPTR; FAR1 family protein
STRING	cassava4.1_002824m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	Potri.014G167000.1
Entrez Gene	7469327

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]