PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G163600.1
Common NamePOPTR_0014s16160g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 394aa    MW: 44993.9 Da    PI: 4.3233
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G163600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM54.44.2e-17221551128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiy...kvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                         lp G+rF+P deelv +yL +++++ k  +++++ i++++i+     ePw++  +  k + ++++fF++  kk ++  rk      g+W++
  Potri.014G163600.1  22 LPHGYRFRPDDEELVRFYLYPRITNPKlfTTIHTPIRDTHIFgdqAKEPWQIWeSFPKRHGEDLFFFTQLIKKGRNFVRKIS-CGPGTWHQ 111
                         699**********************99755555569999987222469****733445567789******999887777666.478***** PP

                 NAM  86 tgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           kd +  ++   + ++  +++ +++   + ++ ++ +W+m ey+l
  Potri.014G163600.1 112 EFKDPPFNVSidpDCKVSVIRRLFTYQ--NPKSDQNGSWFMFEYSL 155
                         ****99988777544555555555554..5555579********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-1919170IPR003441NAC domain
PROSITE profilePS5100523.25122170IPR003441NAC domain
PfamPF023651.5E-1323155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MSLHSSRVQF VPQKPETLTP ELPHGYRFRP DDEELVRFYL YPRITNPKLF TTIHTPIRDT  60
HIFGDQAKEP WQIWESFPKR HGEDLFFFTQ LIKKGRNFVR KISCGPGTWH QEFKDPPFNV  120
SIDPDCKVSV IRRLFTYQNP KSDQNGSWFM FEYSLPSLSE QIVLCRLRKK EVHSTETVQT  180
TTTATTKKRK RDADSEIVDD ATNTIPQKPR IDELDQHQQQ IMGFSVAVEN QQQHLELEPV  240
FDNWAEFDHS ECIYFENVQD LESYLMADDS DITSTSNVAP EPIIYAFNPT ENLQSIEVEC  300
VENDGEAAST QDDDFCFKMI DFSGGYDEAD GVLASQATAE ASVYWVQATP DLDGTCSADA  360
VDYGLEHGVC DSSLTNWSGS FSQMLLEANY LPD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167189RKKEVHSTETVQTTTTATTKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G163600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010999305.10.0PREDICTED: NAC transcription factor 29-like
TrEMBLA0A2K1XWX40.0A0A2K1XWX4_POPTR; Uncharacterized protein
STRINGPOPTR_0014s16160.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13633523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.11e-10NAC-domain protein 101