PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G141400.1
Common NamePOPTR_0014s13780g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 444aa    MW: 50781.7 Da    PI: 6.1713
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G141400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1118.3e-35151062102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d+ +++++sws++g sfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+k++ ++         weF +++F +g+++
  Potri.014G141400.1  15 FLTKTYDMVDDPLTNSVVSWSHSGCSFVVWNPPEFAQDLLPKYFKHNNFSSFVRQLNTYGFRKIDPDQ---------WEFGNEEFIRGQRH 96 
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                          l++i+r+k 
  Potri.014G141400.1  97 ILKNIHRRKP 106
                         *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.0E-38699IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.08E-3411104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-6011104IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-3015104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-201538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-205365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-206678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MDGSQSNSSN APPPFLTKTY DMVDDPLTNS VVSWSHSGCS FVVWNPPEFA QDLLPKYFKH  60
NNFSSFVRQL NTYGFRKIDP DQWEFGNEEF IRGQRHILKN IHRRKPVHSH SMQNHGIISP  120
LAETEKQEYE KEINRLKHDK NELELELQRN EAEKQGFEFQ IVSLGERLQS MECRQKQLMS  180
FLGQLMRKPE FASLLMQQSE YHNKKRKLLK LDYFQGDYKE ENENLCSPIA NLDGLPAPML  240
HPESVEKLDS SLKFLEDFLY AVGESFSEEV CHVGVRSQPS MVIVRELSSS SADGEPWSPR  300
SFPSSPHSRD IRSSPELARC INNVVRQTTP SYLGDDTMPE SSQLQANCKH SRAPASEVIK  360
APALEMKSPT VVNGANDLFW QHFLTEAPGP HDGQESEGRT ERRITDDIRS NTKPDSHERS  420
WWNTNYIDNL AKNMGHIATA ERS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A9e-251310418120Heat shock factor protein 1
5d5u_B9e-251310427129Heat shock factor protein 1
5d5v_B9e-251310427129Heat shock factor protein 1
5d5v_D9e-251310427129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G141400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139800.0KP013980.1 Populus simonii heat shock transcription factor A4b1 (HsfA4b1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321069.10.0heat stress transcription factor A-4b isoform X1
TrEMBLB9IA410.0B9IA41_POPTR; Uncharacterized protein
STRINGPOPTR_0014s13780.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF141001620
Representative plantOGRP52351020
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.12e-80heat shock transcription factor A4A