PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.014G108100.1 | ||||||||
Common Name | POPTR_0014s10370g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 338aa MW: 37808.8 Da PI: 6.1855 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 127.9 | 7.9e-40 | 22 | 149 | 3 | 127 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +G+rFhPt+eelv++yLk+k+ g+++e ++++ v+++k+eP++Lp k ++k+++ wyfF++rd ky ++ r nr tk g+Wk tgk+ + Potri.014G108100.1 22 VGYRFHPTNEELVCNYLKPKILGDEVEDLSIMPVVHVCKHEPSELPdKsNIKSKDAVWYFFCPRDFKYLNSGRYNRRTKLGFWKPTGKNLK 112 7************************999999**************96347888889*********************************99 PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 + +++++g++ktLvfy++++pk+ +t W++hey+ Potri.014G108100.1 113 IRFMgTKKVIGTRKTLVFYTKSSPKPIRTGWIIHEYE 149 988757788***************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 43.02 | 20 | 170 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.44E-44 | 21 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-24 | 22 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MNYNFPSAMN SSPNPNPSIP EVGYRFHPTN EELVCNYLKP KILGDEVEDL SIMPVVHVCK 60 HEPSELPDKS NIKSKDAVWY FFCPRDFKYL NSGRYNRRTK LGFWKPTGKN LKIRFMGTKK 120 VIGTRKTLVF YTKSSPKPIR TGWIIHEYEY ISDLSLSNQG GYVLCKLKKK PDVKTTKGEP 180 NHHMVSISDF EAAPNCSIEG ECGPSMEMPS KFINHSTHGY GESSLLDLDF DNPNLDISAP 240 DEGEWNSLTV LPSGLENGNP WEKTEEGCLR SSVVSPENSP TDALLPDLSQ LIPHLRAELK 300 ALISELENNL RSPFQPAASV STEEIPFHMG FDAPVST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-25 | 23 | 170 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-25 | 23 | 170 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-25 | 23 | 170 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-25 | 23 | 170 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-25 | 23 | 170 | 23 | 168 | NAC domain-containing protein 19 |
3swm_B | 3e-25 | 23 | 170 | 23 | 168 | NAC domain-containing protein 19 |
3swm_C | 3e-25 | 23 | 170 | 23 | 168 | NAC domain-containing protein 19 |
3swm_D | 3e-25 | 23 | 170 | 23 | 168 | NAC domain-containing protein 19 |
3swp_A | 3e-25 | 23 | 170 | 23 | 168 | NAC domain-containing protein 19 |
3swp_B | 3e-25 | 23 | 170 | 23 | 168 | NAC domain-containing protein 19 |
3swp_C | 3e-25 | 23 | 170 | 23 | 168 | NAC domain-containing protein 19 |
3swp_D | 3e-25 | 23 | 170 | 23 | 168 | NAC domain-containing protein 19 |
4dul_A | 3e-25 | 23 | 170 | 20 | 165 | NAC domain-containing protein 19 |
4dul_B | 3e-25 | 23 | 170 | 20 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.8780 | 0.0 | stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.014G108100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002320909.2 | 0.0 | NAC domain-containing protein 71 isoform X1 | ||||
TrEMBL | A0A2K1XTR7 | 0.0 | A0A2K1XTR7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s10370.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16167 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17260.1 | 1e-38 | NAC domain containing protein 86 |
Link Out ? help Back to Top | |
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Phytozome | Potri.014G108100.1 |
Entrez Gene | 7486815 |