PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G099700.1
Common NamePOPTR_0014s09520g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 620aa    MW: 68046.2 Da    PI: 6.5728
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G099700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.1e-13450496455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  Potri.014G099700.1 450 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYINELQ 496
                         799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.1E-5452240IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.14E-18445508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.326446495IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.66E-15449500No hitNo description
PfamPF000101.4E-10450496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-18450508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-16452501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MKIELGVGGG AWNDEDKTMV AAVLGTKAFN YLLSNSVANQ NLLMAMCGDE SLQNKLSDLV  60
DRPNASNFSW NYAIFWQISC SKSGDWVLGW GDGSCREPKE GEESEVTRIL NIRHEDETQQ  120
RMRKRVIQKL QTLFGESDED NYALGLDQVT DTEMFFLASM YFSFPHGEGG PGKCYASGKH  180
MWISDALKPG PDYCVRSFLA KSAGFQTIVL VATDVGVVEL GSVRSVPESI EMVQSIRSWF  240
STRNSSIRAK PMAAAAAAAA AMPAVSEKKD ENSPFSNFGI VERVGVPKIF GQDLNSNHGH  300
GHGFREKLVV RKMEERPSWN AYQNGTRLAL PGAQNGLHGS GWAQSFGMKQ GTPSDVYGSQ  360
ATANNLQELV NGVREEFRLN HYQPQKQVQM QIDFSGASSG PSVIGKPLSA ESEHSDVEAS  420
CKEERPGTAD DRKPRKRGRK PANGREEPLN HVEAERQRRE KLNQRFYALR AVVPNISKMD  480
KASLLGDAIS YINELQTKLK VMEAEREKSG SISRDASALD ANTNGESHNQ APDVDIQASH  540
DELMVRVSCP LDSHPASRVI QAFKEAQITV VESKLSAAND TVFHTFVIKS QGSEQLTKEK  600
LMAAFSRESS SLHSLSSTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-29444506264Transcription factor MYC2
5gnj_B3e-29444506264Transcription factor MYC2
5gnj_E3e-29444506264Transcription factor MYC2
5gnj_F3e-29444506264Transcription factor MYC2
5gnj_G3e-29444506264Transcription factor MYC2
5gnj_I3e-29444506264Transcription factor MYC2
5gnj_M3e-29444506264Transcription factor MYC2
5gnj_N3e-29444506264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1431439RKPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.109660.0bud| catkin
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G099700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024440877.10.0transcription factor bHLH13
RefseqXP_024440878.10.0transcription factor bHLH13
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A2K1XT840.0A0A2K1XT84_POPTR; Uncharacterized protein
STRINGPOPTR_0014s09520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Representative plantOGRP25311123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]