PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G094500.1
Common NamePOPTR_0014s09020g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 315aa    MW: 36090.2 Da    PI: 5.6846
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G094500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.98.1e-21117167155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         ++y+GVr+++ +grW+AeIrdp+    r +r++lg+++taeeAa  +++a+ +++g
  Potri.014G094500.1 117 KKYRGVRQRP-WGRWAAEIRDPY----RrTRVWLGTYDTAEEAAMVYDQAAIRIKG 167
                         59********.**********75....34***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.29E-33117177No hitNo description
PROSITE profilePS5103223.709118175IPR001471AP2/ERF domain
PfamPF008474.0E-14118167IPR001471AP2/ERF domain
SMARTSM003802.6E-39118181IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-22118175IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-30118175IPR001471AP2/ERF domain
PRINTSPR003675.6E-11119130IPR001471AP2/ERF domain
PRINTSPR003675.6E-11141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MFSPKNQTHK RLDCIKKMDR FSTKYTEHKT VTNKLVRWED SKATRIVRIS VTDGNATDSS  60
GDENEEPKIQ HPRIKKHINE IRMTNCSDRE AEDAKKSPGQ QVVKKNSRDQ YYYPEGKKYR  120
GVRQRPWGRW AAEIRDPYRR TRVWLGTYDT AEEAAMVYDQ AAIRIKGPDA QTNFTNTLVS  180
KQHTPDVDIN VNISGYDSGK ESHNSLCSPT SVLRFHSTGE PGPESQAAVQ SDCCWRQNQE  240
VVQEEILKGG DDECLVMDPL CLKEFWDFES PAPIFFEECS VPGTVLREDY ADMPVHLDCD  300
FGSCLWDVDK YFEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-21115174262ATERF1
3gcc_A4e-21115174262ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G094500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2080940.0AC208094.1 Populus trichocarpa clone JGIACSB09-L10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320179.20.0pathogenesis-related genes transcriptional activator PTI6
TrEMBLB9I8U10.0B9I8U1_POPTR; ERF family protein
STRINGPOPTR_0014s09020.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.11e-49cytokinin response factor 5