PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.014G070300.1 | ||||||||
Common Name | POPTR_0014s06580g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | LBD | ||||||||
Protein Properties | Length: 180aa MW: 19389.1 Da PI: 8.2924 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.1 | 1.7e-39 | 12 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C aCk+lr+kC+k+C++apyf +q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA ar+rdPvyG+vg+i++lqqq+ +l Potri.014G070300.1 12 PCGACKFLRKKCVKGCIFAPYFDPDQgTAHFAAVHKVFGASNASKLLLRIPAHKRLDAVVTLCYEALARVRDPVYGCVGHIFTLQQQVLNL 102 7*********************777769*************************************************************** PP DUF260 91 kaelallkee 100 +aela ++++ Potri.014G070300.1 103 QAELAFIQAH 112 *****99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.008 | 11 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-38 | 12 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MMSAGANNGS GPCGACKFLR KKCVKGCIFA PYFDPDQGTA HFAAVHKVFG ASNASKLLLR 60 IPAHKRLDAV VTLCYEALAR VRDPVYGCVG HIFTLQQQVL NLQAELAFIQ AHLSTLQRLP 120 QPQPPSQCAQ SPSQTTLDSS SEVPSFTKLA SSSNISTHFD QLQVQQTSTE MTGFYNPSE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-38 | 3 | 106 | 1 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-38 | 3 | 106 | 1 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.014G070300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002320729.2 | 1e-131 | LOB domain-containing protein 19 | ||||
Swissprot | O81322 | 2e-66 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | B9IC04 | 1e-130 | B9IC04_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s06580.1 | 1e-130 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1771 | 34 | 93 | Representative plant | OGRP405 | 15 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00210.1 | 1e-59 | LOB domain-containing protein 31 |
Link Out ? help Back to Top | |
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Phytozome | Potri.014G070300.1 |
Entrez Gene | 7488902 |