PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.014G050000.2 | ||||||||
Common Name | POPTR_0014s04890g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 176aa MW: 20112 Da PI: 6.3955 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 33.5 | 8.7e-11 | 154 | 175 | 1 | 22 |
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDgy+WrKYGqK+vk+s +pr Potri.014G050000.2 154 LDDGYKWRKYGQKVVKNSLHPR 175 59*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-12 | 139 | 175 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.29E-9 | 146 | 175 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 13.448 | 149 | 175 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.7E-7 | 155 | 175 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MHQISQQEEE EEAQEGQRSF LIRMDHGERD VPNYELHVSF STPQAIHEMG FVQFEENQVL 60 SFLAPSQSSQ ISQPLNANTT TTNNTHMGFS HNDQQVGALD PKASSDENCT GNANNDGNNS 120 WWRSSSADKN KLKVRRKLRE PRFCFQTRSE VDVLDDGYKW RKYGQKVVKN SLHPR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 138 | KVRRKLR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00618 | PBM | Transfer from AT2G44745 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.014G050000.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006375168.1 | 1e-130 | probable WRKY transcription factor 12 | ||||
Swissprot | Q93WY4 | 8e-42 | WRK12_ARATH; Probable WRKY transcription factor 12 | ||||
TrEMBL | U5FPM1 | 1e-129 | U5FPM1_POPTR; WRKY family protein | ||||
STRING | POPTR_0014s04890.1 | 1e-130 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44745.1 | 4e-37 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.014G050000.2 |
Entrez Gene | 18105082 |
Publications ? help Back to Top | |||
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