PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G045100.1
Common NamePOPTR_0014s04460g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 299aa    MW: 33145.1 Da    PI: 8.2158
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G045100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.5e-18132186256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ +++keq  +Lee F+++++++ +e+  LAk+l+L  rqV vWFqNrRa+ k
  Potri.014G045100.1 132 RKKLRLSKEQSLVLEETFKEHNTLNPKEKLALAKQLNLRPRQVEVWFQNRRARTK 186
                         788899***********************************************98 PP
2HD-ZIP_I/II125.52.5e-40132221191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rlskeq+ +LEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  Potri.014G045100.1 132 RKKLRLSKEQSLVLEETFKEHNTLNPKEKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELR-AL 221
                         69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.6E-321103IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.608.3E-19110186IPR009057Homeodomain-like
SuperFamilySSF466892.44E-19119189IPR009057Homeodomain-like
PROSITE profilePS5007117.443128188IPR001356Homeobox domain
SMARTSM003895.4E-16130192IPR001356Homeobox domain
PfamPF000461.2E-15132186IPR001356Homeobox domain
CDDcd000864.13E-15132189No hitNo description
PROSITE patternPS000270163186IPR017970Homeobox, conserved site
PfamPF021832.5E-11188222IPR003106Leucine zipper, homeobox-associated
SMARTSM003405.7E-27188231IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGDKNDGLGL SLSLGFDATQ QNHQQQPSLK LNLMPVPSQN NHRKTSLTDL FQSSDRACGT  60
RFFQRGIDMN RVPAAVTDCD DETGVSSPNS TLSSLSGKRS EREQIGEETE AERASCSRDS  120
DDEDGAGGDA SRKKLRLSKE QSLVLEETFK EHNTLNPKEK LALAKQLNLR PRQVEVWFQN  180
RRARTKLKQT EVDCEYLKRC CENLTEENRR LQKEVQELRA LKLSPQLYMH MNPPTTLTMC  240
PSCERVAVSS ASSSSAAAAS SALAPTASTR QPQRPVPINP WATMPVHQRT FDAPASRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130136SRKKLRL
2180188RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G045100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006375109.10.0homeobox-leucine zipper protein HAT3
SwissprotP466021e-107HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLU5FSF50.0U5FSF5_POPTR; Uncharacterized protein
STRINGPOPTR_0014s04460.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Representative plantOGRP19616156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.11e-88homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]