PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G037200.2
Common NamePOPTR_0014s03650g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family G2-like
Protein Properties Length: 303aa    MW: 33421.6 Da    PI: 9.5499
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G037200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.91.7e-31134187255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Potri.014G037200.2 134 PRMRWTTTLHAHFVHAVRLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 187
                         9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.15E-15131188IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.8E-28132188IPR009057Homeodomain-like
TIGRFAMsTIGR015575.5E-23134187IPR006447Myb domain, plants
PfamPF002492.5E-7135186IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MFSSSKHIIM RSVSPFPDLS LQISPPSVEA KETGYDGGLT RKALCSDRSS TTDSGSSGSD  60
LSHENGFLNQ ERSYNLGPSE PTLSLGFDMA DLSSQTLQLP RNLNHHHHQP QIYGRNFKRS  120
ARMINGVKRS VRAPRMRWTT TLHAHFVHAV RLLGGHERAT PKSVLELMNV KDLTLAHVKS  180
HLQMYRTVKS TDRGPGKLYC LSSGKADANN LPQPLNNPPP SPPPPPLSST QKNQRSLGDE  240
KNISSLEALT YVNVEAHDHS KRLDSSSSSS SDMLLNLEFT LGRPSWQLDY AETTNELTLL  300
KC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-17135189458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-17135189458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A7e-17135189357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-17135189357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-17135189357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-17135189357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-17135189458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-17135189458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-17135189458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-17135189458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-17135189458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-17135189458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During ovule development, first expressed in the inner integument primordium and then on the abaxial side of the inner integument. {ECO:0000269|PubMed:16623911}.
UniprotTISSUE SPECIFICITY: Expressed in the periphery of the primary root apex and lateral root. {ECO:0000269|PubMed:15286295}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:19054366, ECO:0000269|PubMed:20444210}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G037200.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2719890.0KP271989.1 UNVERIFIED: Populus trichocarpa isolate Potri.014G037200_BESC-125 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024440470.11e-172probable transcription factor KAN4
SwissprotQ9FJV52e-73KAN4_ARATH; Probable transcription factor KAN4
TrEMBLA0A2K1XQ131e-171A0A2K1XQ13_POPTR; Uncharacterized protein
STRINGPOPTR_0014s03650.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.14e-70G2-like family protein
Publications ? help Back to Top
  1. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  2. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  3. Gomez MD,Ventimilla D,Sacristan R,Perez-Amador MA
    Gibberellins Regulate Ovule Integument Development by Interfering with the Transcription Factor ATS.
    Plant Physiol., 2016. 172(4): p. 2403-2415
    [PMID:27794102]