PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.014G028200.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bZIP

Protein Properties

Length: 412aa MW: 44007.3 Da PI: 9.3544

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.014G028200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.8	7.3e-16	329	379	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L+aeN++L+k+ e+ ++ Potri.014G028200.1 329 RRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKAENEELQKKQAEMMEM 379 79***************************************9887777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.3E-15	325	389	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.312	327	378	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.7E-13	329	380	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-11	329	379	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.6E-15	329	378	No hit	No description
CDD	cd14707	2.72E-27	329	383	No hit	No description
PROSITE pattern	PS00036	0	332	347	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MGTNFNFKSF TNDPSDAGGG RPPGNFPLAS QSSIYSLTLE ELQNTMGGSL GKDFGSMNMD 60 ELLKSIWSAE ETQTVATATS AGVQDGVGLQ RQGSLTLPRT LSLKTVDEVW KDMSKEYAIN 120 GTSAGVANNV PQRQPTLGEI TLEEFLVRAG VVREDIPVAA KINTNGGFFG DLSRLANNSS 180 AIGFQQNRGV GLNNNNTNQI SLQSSNLPLN GNGFRSNQAQ VQQQQQQQIF PKQPNMGYVT 240 QMPPQSSPGI RGGILGIGDQ GINSNLMQGG GMGVVGLGVA TGSPANQLSS DGIGKSNGDT 300 SSVSPVPYVF SGSGRGRRAG GAVEKVVERR QRRMIKNRES AARSRARKQA YTMELEAEVA 360 KLKAENEELQ KKQAEMMEMQ KNQVPNLSTT QNRTNNLTYL LITCLMASQC C*

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MGTNFNFKSF TNDPSDAGGG RPPGNFPLAS QSSIYSLTLE ELQNTMGGSL GKDFGSMNMD  60
ELLKSIWSAE ETQTVATATS AGVQDGVGLQ RQGSLTLPRT LSLKTVDEVW KDMSKEYAIN  120
GTSAGVANNV PQRQPTLGEI TLEEFLVRAG VVREDIPVAA KINTNGGFFG DLSRLANNSS  180
AIGFQQNRGV GLNNNNTNQI SLQSSNLPLN GNGFRSNQAQ VQQQQQQQIF PKQPNMGYVT  240
QMPPQSSPGI RGGILGIGDQ GINSNLMQGG GMGVVGLGVA TGSPANQLSS DGIGKSNGDT  300
SSVSPVPYVF SGSGRGRRAG GAVEKVVERR QRRMIKNRES AARSRARKQA YTMELEAEVA  360
KLKAENEELQ KKQAEMMEMQ KNQVPNLSTT QNRTNNLTYL LITCLMASQC C*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and siliques but not in seeds. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.014G028200.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ487100	0.0	DQ487100.1 Populus suaveolens abscisic acid responsive element-binding protein 2 (ABF2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024441287.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 5 isoform X1
Swissprot	Q9M7Q4	1e-117	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	U5FRA9	0.0	U5FRA9_POPTR; Uncharacterized protein
STRING	POPTR_0014s02810.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1962	34	81
Representative plant	OGRP3984	10	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	1e-96	abscisic acid responsive elements-binding factor 2

Link Out ? help Back to Top
Phytozome	Potri.014G028200.1

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]