PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.014G025700.2 | ||||||||
Common Name | POPTR_0014s02580g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 293aa MW: 32876.7 Da PI: 4.9625 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 88 | 1.8e-27 | 19 | 155 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.....vikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratks 80 lppG+rF P+de+l ++yLk+k ++ ++++++ ike+d+y++eP dLp+ +ka++++wy ++k++ + ++r++k Potri.014G025700.2 19 LPPGCRFYPSDEQLFCYYLKNKNRTIPNDTDDvngydLIKELDLYDYEPFDLPEnacyayGYKARKRHWYCYTKEQVRV-----PRRKAKG 104 79********************9999855544455548**************955777765556778999999887765.....678999* PP NAM 81 gyWkatgkdkevlsk..kgelvglkktLvfykg.rapkgektdWvmheyrl 128 g+W+ +g+ ++v++ +++++g+++ +vfy g + +++++t Wv+ ey+l Potri.014G025700.2 105 GFWRISGRVRDVVVGlgGEAVMGTRTRFVFYMGnSVKSAVRTGWVLYEYAL 155 *************99878889**********984556788*********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-35 | 11 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 37.241 | 19 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-17 | 20 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MNTSMEESNT NPKTLSSSLP PGCRFYPSDE QLFCYYLKNK NRTIPNDTDD VNGYDLIKEL 60 DLYDYEPFDL PENACYAYGY KARKRHWYCY TKEQVRVPRR KAKGGFWRIS GRVRDVVVGL 120 GGEAVMGTRT RFVFYMGNSV KSAVRTGWVL YEYALVDHAK ASFVLCRVFV KSRGGNSISE 180 NVVSSCAEES VSALPSIGAQ HDEFLTPDIA EAKGPNDLSR YSARLDRELD DQVTTRPLSI 240 SSFQFPSDSQ CNEAVRRTSG PTGGNMYVDA ETSQQLQSIL EGDFIELDDL VD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-20 | 2 | 171 | 1 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-20 | 2 | 171 | 1 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-20 | 2 | 171 | 1 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-20 | 2 | 171 | 1 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-20 | 2 | 171 | 1 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-20 | 2 | 171 | 1 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.8596 | 0.0 | stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.014G025700.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024441604.1 | 0.0 | NAC transcription factor 29 isoform X1 | ||||
TrEMBL | A0A2K1XPG3 | 0.0 | A0A2K1XPG3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s02580.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 6e-22 | NAC-like, activated by AP3/PI |
Link Out ? help Back to Top | |
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Phytozome | Potri.014G025700.2 |
Entrez Gene | 18104865 |