PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G025700.1
Common NamePOPTR_0014s02580g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 293aa    MW: 32876.7 Da    PI: 4.9625
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G025700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM881.8e-27191551128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.....vikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratks 80 
                         lppG+rF P+de+l ++yLk+k ++ ++++++      ike+d+y++eP dLp+       +ka++++wy ++k++ +      ++r++k 
  Potri.014G025700.1  19 LPPGCRFYPSDEQLFCYYLKNKNRTIPNDTDDvngydLIKELDLYDYEPFDLPEnacyayGYKARKRHWYCYTKEQVRV-----PRRKAKG 104
                         79********************9999855544455548**************955777765556778999999887765.....678999* PP

                 NAM  81 gyWkatgkdkevlsk..kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                         g+W+ +g+ ++v++   +++++g+++ +vfy g + +++++t Wv+ ey+l
  Potri.014G025700.1 105 GFWRISGRVRDVVVGlgGEAVMGTRTRFVFYMGnSVKSAVRTGWVLYEYAL 155
                         *************99878889**********984556788*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-3511171IPR003441NAC domain
PROSITE profilePS5100537.24119171IPR003441NAC domain
PfamPF023654.8E-1720155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MNTSMEESNT NPKTLSSSLP PGCRFYPSDE QLFCYYLKNK NRTIPNDTDD VNGYDLIKEL  60
DLYDYEPFDL PENACYAYGY KARKRHWYCY TKEQVRVPRR KAKGGFWRIS GRVRDVVVGL  120
GGEAVMGTRT RFVFYMGNSV KSAVRTGWVL YEYALVDHAK ASFVLCRVFV KSRGGNSISE  180
NVVSSCAEES VSALPSIGAQ HDEFLTPDIA EAKGPNDLSR YSARLDRELD DQVTTRPLSI  240
SSFQFPSDSQ CNEAVRRTSG PTGGNMYVDA ETSQQLQSIL EGDFIELDDL VD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-2021711165NO APICAL MERISTEM PROTEIN
1ut4_B1e-2021711165NO APICAL MERISTEM PROTEIN
1ut7_A1e-2021711165NO APICAL MERISTEM PROTEIN
1ut7_B1e-2021711165NO APICAL MERISTEM PROTEIN
4dul_A1e-2021711165NAC domain-containing protein 19
4dul_B1e-2021711165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.85960.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G025700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441604.10.0NAC transcription factor 29 isoform X1
TrEMBLA0A2K1XPG30.0A0A2K1XPG3_POPTR; Uncharacterized protein
STRINGPOPTR_0014s02580.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130012628
Representative plantOGRP1150445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.16e-22NAC-like, activated by AP3/PI