PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G153400.2
Common NamePOPTR_0013s14960g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 452aa    MW: 49527.9 Da    PI: 7.1458
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G153400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.18.9e-34258315260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  Potri.013G153400.2 258 DDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSL-DGQITEIVYKGSHNHPK 315
                         8****************************************.***************85 PP
2WRKY352.9e-11430451122
                         ---SS-EEEEEEE--TT-SS-E CS
                WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                         ldDgy+WrKYGqK+vkg+++pr
  Potri.013G153400.2 430 LDDGYRWRKYGQKVVKGNPNPR 451
                         59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-29247316IPR003657WRKY domain
SuperFamilySSF1182909.94E-26252316IPR003657WRKY domain
PROSITE profilePS5081124.019252316IPR003657WRKY domain
SMARTSM007748.6E-37257315IPR003657WRKY domain
PfamPF031061.0E-25258314IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-13415451IPR003657WRKY domain
SuperFamilySSF1182903.14E-9422451IPR003657WRKY domain
PROSITE profilePS5081116.386425451IPR003657WRKY domain
PfamPF031069.5E-7431451IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MAASSGSLDT SGNSHPQSSN NYFSFSTNSS NHYPFMTSSS FTDLLASNDE EPVNNNTGNS  60
KLGDRIAERT GSGVPKFKST PPPSLPLSPP PVSPSYYFAI PPGLSPTELL DSPVLLNPSN  120
ILPSPTTGTF PGQGLNWKSS SGNIQQNVKK EDRSFSDFSF QQPARPSTTS SAMFQSSNST  180
VQPGQQQTWG FQEPAKQDEF VSGKSNMVKM EYNSNSMKSF SPEIAAIQAN PQSNNGFQSD  240
HGNQPQQYQS VREQKRSDDG YNWRKYGQKQ VKGSENPRSY YKCTFPNCPT KKKVERSLDG  300
QITEIVYKGS HNHPKPQSTR RSSSTGSNPA MIPAPNSNSN EIQDQSYVTH GNGQMDSSVA  360
TPDNSSISIG DDDFDSQKSK SVGGDDLDED EPEAKRWKRE RDNEGISAPG SRTVREPRVV  420
VQTTSDIDIL DDGYRWRKYG QKVVKGNPNP R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-16249316977Probable WRKY transcription factor 4
2ayd_A4e-162583161574WRKY transcription factor 1
2lex_A3e-16249316977Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.9760.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G153400.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1473030.0EF147303.1 Populus trichocarpa clone WS0122_H07 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002319959.10.0probable WRKY transcription factor 25
TrEMBLB9I6U50.0B9I6U5_POPTR; Uncharacterized protein
STRINGPOPTR_0013s14960.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.16e-70WRKY DNA-binding protein 33