PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G149100.1
Common NamePOPTR_0013s14550g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 266aa    MW: 30489.4 Da    PI: 4.5811
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G149100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.7e-141461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W+ eEde+l  +++++G  +W+  ++  g+ R++k+c++rw +yl
  Potri.013G149100.1 14 KGSWSIEEDEKLRVYIQKYGHWNWRQLPKFAGLSRCGKSCRLRWMNYL 61
                        799*****************99************************97 PP
2Myb_DNA-binding54.33.2e-1767111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg++++eEd l+++ +++lG++ W+ I+ +++ gRt++++k++w++ 
  Potri.013G149100.1  67 RGNFSEEEDNLIIQMHEELGNK-WSIISGKLP-GRTDNEIKNHWHTN 111
                         89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.677961IPR017930Myb domain
SuperFamilySSF466893.52E-3111108IPR009057Homeodomain-like
SMARTSM007173.7E-101363IPR001005SANT/Myb domain
PfamPF002499.6E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-221568IPR009057Homeodomain-like
CDDcd001673.07E-81661No hitNo description
PROSITE profilePS5129426.96762116IPR017930Myb domain
SMARTSM007173.1E-1666114IPR001005SANT/Myb domain
PfamPF002491.5E-1567111IPR001005SANT/Myb domain
CDDcd001672.04E-1169112No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2569116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MVKSASIDKN GIRKGSWSIE EDEKLRVYIQ KYGHWNWRQL PKFAGLSRCG KSCRLRWMNY  60
LRPDVKRGNF SEEEDNLIIQ MHEELGNKWS IISGKLPGRT DNEIKNHWHT NLSKRVKQNQ  120
PVSSEVMNKE QSSESSQSEV IQTKKSETDS VSVNTPSESD HQQKNVENFP SSQEISCSEF  180
SSMSNDSVSG MNSVAEDSFS SMEIFQDSGS DFWNLPFLAD NNYNQDGYES LFLTEEGYMS  240
FYASNYDDDG TYWIQQVLQE LEGSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-281411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G149100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024439116.10.0transcription factor MYB15
TrEMBLA0A2K1Y5V70.0A0A2K1Y5V7_POPTR; Uncharacterized protein
STRINGPOPTR_0013s14550.11e-174(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-55myb domain protein 15