PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G124400.1
Common NamePOPTR_0013s12810g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 318aa    MW: 35442.1 Da    PI: 6.178
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G124400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.77.9e-11206253552
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                         kr +r   NR +A+rsR RK+++i eLe+ v +L+ae + L  ++  l
  Potri.013G124400.1 206 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAYL 253
                         8999*********************************98887666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.2E-14202266IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.726204256IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.9E-13206257No hitNo description
SuperFamilySSF579593.21E-11206260No hitNo description
PfamPF001703.2E-9206252IPR004827Basic-leucine zipper domain
CDDcd147037.86E-23207257No hitNo description
PROSITE patternPS000360209224IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MAQLPPKIPN NMTPSWPDFS HKKSPSICIM GTSPPHDANA VIPTVTANTT ATVASQNPSW  60
VDEFLDFSLT RRGTHRRSVS DSIAFLEEAP TMLEECRSTG APGLGSRHYS SSDFDRFDDE  120
QFMSMFNDGI SNAVAAPNSS STPSSPSDHN SINDEREATL SEQQQQQKVR DENDEGQNLS  180
EWETPSTVPS ATSPATTSNE NKIDPKRVKR ILANRQSAQR SRVRKLQYIS ELERSVTSLQ  240
AEVSVLSPRV AYLDHQRLLL NVDNSALKQR IAALSQDKIF KDAHQEALRT EIERLRQVYQ  300
QQNLKMDKTN SSINQNN*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator. {ECO:0000269|PubMed:17719007}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G124400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006376412.20.0basic leucine zipper 61
SwissprotQ9M2K41e-107BZP61_ARATH; Basic leucine zipper 61
TrEMBLA0A2K1Y4S80.0A0A2K1Y4S8_POPTR; Uncharacterized protein
STRINGPOPTR_0013s12810.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20113488
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.16e-96bZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]