PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G100300.1
Common NamePOPTR_0013s10420g, RAP2L9
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 169aa    MW: 18234.4 Da    PI: 6.9464
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G100300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.18e-172070155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +++kGVr++k +g+Wv+eIr p   gk+ r +lg++ t+e Aa a++ a  +l+g
  Potri.013G100300.1 20 KKFKGVRRRK-WGKWVSEIRIP---GKQDRLWLGSYSTPEAAAVAHDIASYCLRG 70
                        59*****998.**********8...556*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.40E-252080No hitNo description
PfamPF008473.2E-102170IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-172181IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.2E-252180IPR001471AP2/ERF domain
PROSITE profilePS5103221.8522180IPR001471AP2/ERF domain
SMARTSM003804.1E-282186IPR001471AP2/ERF domain
PRINTSPR003677.2E-82233IPR001471AP2/ERF domain
PRINTSPR003677.2E-84460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MSGSSSSRTD QESGASAARK KFKGVRRRKW GKWVSEIRIP GKQDRLWLGS YSTPEAAAVA  60
HDIASYCLRG PSSIESLNFP LMLPASVRED MSPKSIQKAA SDAGMAIDAQ MILNRVPENE  120
VKFWTASGGV NHGLEIELCE PAGGDHGGNW HGNNTGMREG DISIEDYL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-141480772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12228KGVRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G100300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559500.0EF155950.1 Populus trichocarpa RAP2-like protein (RAP2L9) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006376167.11e-122ethylene-responsive transcription factor ERF020 isoform X1
SwissprotO805429e-42ERF19_ARATH; Ethylene-responsive transcription factor ERF019
TrEMBLA9PL991e-121A9PL99_POPTR; RAP2-like protein
STRINGPOPTR_0013s10420.11e-121(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54893054
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22810.12e-44ERF family protein
Publications ? help Back to Top
  1. Scarpeci TE,Frea VS,Zanor MI,Valle EM
    Overexpression of AtERF019 delays plant growth and senescence, and improves drought tolerance in Arabidopsis.
    J. Exp. Bot., 2017. 68(3): p. 673-685
    [PMID:28204526]