PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.013G042600.1 | ||||||||
Common Name | POPTR_0013s03990g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 355aa MW: 40080 Da PI: 10.3156 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.7 | 8.7e-32 | 287 | 344 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYegeHnh+ Potri.013G042600.1 287 DEYSWRKYGQKPIKGSPHPRGYYKCSSLrGCPARKHVERCLEDPSMLIVTYEGEHNHS 344 9*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 2.0E-18 | 238 | 283 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 3.6E-34 | 273 | 344 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.964 | 280 | 346 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-27 | 283 | 344 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.7E-39 | 285 | 345 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.1E-27 | 287 | 343 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MEEVEEVHKA AIESCNRVIG LLCQQKDQVQ GRNLMVETRE TVFKFKRVIS LLSTGLGHGR 60 VRKMKKLRPS LPQNIFLDSP NCKTVLSPKP LQMVPPNFLE TPLTDMDAKS KPSIQISQKM 120 LLENPVLELN SNIRPPVQIM QTKPPQNFQL PQQHQQIQRM HFQQQQQQMK YQADRVYSRS 180 NGGINLKFDG STCTPTMSST RSFISSLSMD GAVSTFDGDS FHLIGMPHSS DHISQQTRRR 240 CSGRGEDGNA KCSSSGKCHC SKRRKLRVKR SIKVPAISNK VADIPPDEYS WRKYGQKPIK 300 GSPHPRGYYK CSSLRGCPAR KHVERCLEDP SMLIVTYEGE HNHSRLISSQ SAHT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-20 | 283 | 343 | 12 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.013G042600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ377445 | 0.0 | GQ377445.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 25 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002319082.3 | 0.0 | probable WRKY transcription factor 74 | ||||
Swissprot | Q9SR07 | 1e-126 | WRK39_ARATH; Probable WRKY transcription factor 39 | ||||
TrEMBL | A0A2K1Y0T8 | 0.0 | A0A2K1Y0T8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0013s03990.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2637 | 34 | 79 | Representative plant | OGRP1817 | 15 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04670.1 | 1e-115 | WRKY DNA-binding protein 39 |
Link Out ? help Back to Top | |
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Phytozome | Potri.013G042600.1 |
Entrez Gene | 7487679 |
Publications ? help Back to Top | |||
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