PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.013G038300.1 | ||||||||
Common Name | POPTR_0013s03580g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | CPP | ||||||||
Protein Properties | Length: 214aa MW: 23740.5 Da PI: 4.7461 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 27.1 | 8.5e-09 | 8 | 34 | 14 | 40 |
TCR 14 lkkYCeCfaagkkCseeCkCedCkNke 40 l YCeCfaag +C e C+C dC+N+ Potri.013G038300.1 8 LYSYCECFAAGLYCIEPCSCLDCFNNP 34 568**********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 13.329 | 1 | 89 | IPR005172 | CRC domain |
SMART | SM01114 | 4.8E-4 | 3 | 36 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.7E-5 | 8 | 33 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MFTRSCYLYS YCECFAAGLY CIEPCSCLDC FNNPGHEGTV LETRGQIESR NPLAFAPKVI 60 RNLDSASEFR GGVGCSSYCR CEGCKNTFGC KSGVEEDDLK WEESKIHEDA SDLNLLDIIE 120 KGEDHPDLMP PSQNSRTDFF YHQPKYEKHL KVIPEDETPE ILNSNCSPTS EVKSVSPNCP 180 RVSPPHHGFG SSASWMILRS LNPSPSLNPS SEQ* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed at the first stage of pollen development in uninucleate microspores and bicellular pollen but not in tricellular and mature pollen. {ECO:0000269|PubMed:18057042}. | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers with highest levels in developing ovules and microspores. {ECO:0000269|PubMed:10769244, ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:18057042}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269|PubMed:10769244, ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:9043081, ECO:0000269|PubMed:9725857}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.013G038300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC217590 | 1e-129 | AC217590.1 Populus trichocarpa clone POP067-L23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024456351.1 | 1e-105 | protein tesmin/TSO1-like CXC 2 isoform X1 | ||||
Swissprot | Q9LUI3 | 7e-43 | TSO1_ARATH; CRC domain-containing protein TSO1 | ||||
TrEMBL | A0A2K2ABV5 | 1e-104 | A0A2K2ABV5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0013s03580.1 | 1e-157 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP993 | 17 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 8e-43 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.013G038300.1 |
Entrez Gene | 7487658 |
Publications ? help Back to Top | |||
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