PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.012G143200.2

Common Name

POPTR_0012s13010g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 687aa MW: 76642.5 Da PI: 7.1587

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.012G143200.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00091	77	98	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rH+r+H Potri.012G143200.2 77 KCSKCSREFCSSINYRRHLRVH 98 7********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.346	76	103	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	78	99	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence Send to blast
MPVVKPVSSI IDVMRPAEGN ESSLDTFIRD AIGKQPLLSI SRPNDNPVQW IQLLHALDQP 60 DYPGWPLLTP LKAQMQKCSK CSREFCSSIN YRRHLRVHHR LKRLDKDSAK NRDLLGAFWD 120 KLSEDEAKEI LSFKDVTFEE VPGSSIIRSL MTVIRKPGIS SLTQSCWRAG SDLLDLVQGR 180 PSRFPLSSGQ LFSTLDDASE NTFLCGTAVL IQKYIFDGGA GKIGLETKNI VACTSFVVEQ 240 KLINAWLADQ DAEALRCQKL LVEEEEAAQR RQVELLERKR QKKLRLKEQK EKEQRLDDKV 300 DDKECIEDTL EAVPQAEQSC PLAISDSDTL GSEILPDDVP SSLEPLQLPR TDEDFDLENQ 360 MGCGGGRSML QGKSHMHIVV ARWHGPLKSQ RNHLSYGFHA NQNSHAPKPG TIQKHGNLRD 420 FKPGPVMNGN RKWSRKPKPE YNGESLKARV QKEVVTVLDH DKKGEVLIGS ISVTLGDCSH 480 DEGNNLDGAR ADYLVEHEIL KKKNVQEKHN RPDSVQCGTN RSTVKLWRPV SRNGSKDLML 540 VENGSRECQH DNIDGKGEDQ NFNDSSPRSC AMDNTFGGME NGSLPGGLLP GVLQFTSHEA 600 RAFLAERWKE AIAAEHVKLA LSPDYQIATN HSSDTSKHND ISSAENQLFN VEAQESSTSG 660 AGRAKYKTKP DNGVKLKYIP KQRTII*

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence Send to blast

MPVVKPVSSI IDVMRPAEGN ESSLDTFIRD AIGKQPLLSI SRPNDNPVQW IQLLHALDQP  60
DYPGWPLLTP LKAQMQKCSK CSREFCSSIN YRRHLRVHHR LKRLDKDSAK NRDLLGAFWD  120
KLSEDEAKEI LSFKDVTFEE VPGSSIIRSL MTVIRKPGIS SLTQSCWRAG SDLLDLVQGR  180
PSRFPLSSGQ LFSTLDDASE NTFLCGTAVL IQKYIFDGGA GKIGLETKNI VACTSFVVEQ  240
KLINAWLADQ DAEALRCQKL LVEEEEAAQR RQVELLERKR QKKLRLKEQK EKEQRLDDKV  300
DDKECIEDTL EAVPQAEQSC PLAISDSDTL GSEILPDDVP SSLEPLQLPR TDEDFDLENQ  360
MGCGGGRSML QGKSHMHIVV ARWHGPLKSQ RNHLSYGFHA NQNSHAPKPG TIQKHGNLRD  420
FKPGPVMNGN RKWSRKPKPE YNGESLKARV QKEVVTVLDH DKKGEVLIGS ISVTLGDCSH  480
DEGNNLDGAR ADYLVEHEIL KKKNVQEKHN RPDSVQCGTN RSTVKLWRPV SRNGSKDLML  540
VENGSRECQH DNIDGKGEDQ NFNDSSPRSC AMDNTFGGME NGSLPGGLLP GVLQFTSHEA  600
RAFLAERWKE AIAAEHVKLA LSPDYQIATN HSSDTSKHND ISSAENQLFN VEAQESSTSG  660
AGRAKYKTKP DNGVKLKYIP KQRTII*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	276	283	ERKRQKKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.012G143200.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006377062.2	0.0	uncharacterized protein LOC18103947
TrEMBL	A0A2K1YDH3	0.0	A0A2K1YDH3_POPTR; Uncharacterized protein
STRING	POPTR_0012s13010.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-132	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Potri.012G143200.2
Entrez Gene	18103947