PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.012G143200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 732aa MW: 81532.6 Da PI: 7.1542 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.4 | 0.00098 | 77 | 98 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rH+r+H Potri.012G143200.1 77 KCSKCSREFCSSINYRRHLRVH 98 7********************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.346 | 76 | 103 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 78 | 99 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 732 aa Download sequence Send to blast |
MPVVKPVSSI IDVMRPAEGN ESSLDTFIRD AIGKQPLLSI SRPNDNPVQW IQLLHALDQP 60 DYPGWPLLTP LKAQMQKCSK CSREFCSSIN YRRHLRVHHR LKRLDKDSAK NRDLLGAFWD 120 KLSEDEAKEI LSFKDVTFEE VPGSSIIRSL MTVIRKPGIS SLTQSCWRAG SDLLDLVQGR 180 PSRFPLSSGQ LFSTLDDASE NTFLCGTAVL IQKYIFDGGA GKIGLETKNI VACTSFVVEQ 240 KLINAWLADQ DAEALRCQKL LVEEEEAAQR RQVELLERKR QKKLRLKEQK EKEQRLDDKV 300 DDKECIEDTL EAVPQAEQSC PLAISDSDTL GSEILPDDVP SSLEPLQLPR TDEDFDLENQ 360 MGCGGGRSML QGKSHMHIVV ARWHGPLKSQ RNHLSYGFHA NQNSHAPKPG TIQKHGNLRD 420 FKPGPVMNGN RKWSRKPKPE YNGESLKARV QKEVVTVLDH DKKGEVLIGS ISVTLGDCSH 480 DEGNNLDGAR ADYLVEHEIL KKKNVQEKHN RPDSVQCGTN RSTVKLWRPV SRNGSKDLML 540 VENGSRECQH DNIDGKGEDQ NFNDSSPRSC AMDNTFGGME NGSLPGGLLP GVLQFTSHEA 600 RAFLAESKFI FVCTCTCIVL FPPYCVIILL LYVHSLICLA SLNLIGYISP VGWKEAIAAE 660 HVKLALSPDY QIATNHSSDT SKHNDISSAE NQLFNVEAQE SSTSGAGRAK YKTKPDNGVK 720 LKYIPKQRTI I* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 276 | 283 | ERKRQKKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.012G143200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006377062.2 | 0.0 | uncharacterized protein LOC18103947 | ||||
TrEMBL | A0A385JIG7 | 0.0 | A0A385JIG7_POPTO; C2H2-like zinc finger protein | ||||
STRING | POPTR_0012s13010.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4517 | 27 | 39 | Representative plant | OGRP3643 | 11 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25610.1 | 1e-123 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.012G143200.1 |