PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.012G134100.1 | ||||||||
Common Name | POPTR_0012s13870g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 256aa MW: 27871.1 Da PI: 4.9211 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.2 | 4.8e-19 | 85 | 135 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+Wv+e+r+p +k+ r++lg+f tae+Aa+a++ a+++l+g Potri.012G134100.1 85 PVYRGVRRRN-SGKWVCEVREP---NKKSRIWLGTFPTAEMAARAHDVAALALRG 135 68*****888.8******9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.0E-14 | 85 | 135 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-21 | 86 | 145 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.958 | 86 | 143 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-32 | 86 | 145 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.2E-31 | 86 | 149 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-9 | 87 | 98 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.22E-31 | 87 | 145 | No hit | No description |
PRINTS | PR00367 | 3.7E-9 | 109 | 125 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MDLFSHYSDP SPFGATDFWS VFNENNGINQ EQCSYSPVLS DSSISSNVTT RVQPAPNFSD 60 EEVMLASRNP KKRAGRKKFR ETRHPVYRGV RRRNSGKWVC EVREPNKKSR IWLGTFPTAE 120 MAARAHDVAA LALRGRSACL NFADSAWRLP VPASSEAKDI QKAAAEAAGG FRPEGCVGGE 180 LMRTGDEGEK AAETTAEAGE EVFYMDDEAV FGMPGLLANM AEGMLLPPPH CGGGGDGWDN 240 MENIDADMPL WSFSI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-15 | 84 | 142 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.10833 | 0.0 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00557 | DAP | Transfer from AT5G51990 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.012G134100.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF147667 | 0.0 | EF147667.1 Populus trichocarpa clone WS0124_D15 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002318846.1 | 0.0 | dehydration-responsive element-binding protein 1A | ||||
Swissprot | Q9FJ93 | 4e-80 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | B9I4F3 | 0.0 | B9I4F3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s13870.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 3e-64 | C-repeat-binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Potri.012G134100.1 |
Entrez Gene | 7482117 |
Publications ? help Back to Top | |||
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