PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.012G132600.3 | ||||||||
Common Name | POPTR_0012s14020g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 186aa MW: 21912.2 Da PI: 8.6099 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.3 | 1.1e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +rienk+ rqvtfskRrng+lKKA+ELS LCdaeva+iifss+gkl+e+ss Potri.012G132600.3 9 ERIENKISRQVTFSKRRNGLLKKAYELSLLCDAEVALIIFSSHGKLFEFSS 59 69***********************************************96 PP | |||||||
2 | K-box | 94.1 | 2.3e-31 | 77 | 170 | 5 | 98 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 ++++ e+ + +l+qe+++L+++ e+Lqr+qR++lGedLe+L +keL+++e+qL+k l++ R++K++ll++++eel+ ke+el+eenk+L+ Potri.012G132600.3 77 QDTNIPEEGSHNLYQEVSRLRAKCETLQRSQRNFLGEDLEPLAFKELEKIEKQLDKTLSQARQRKTQLLFDKMEELRLKEQELEEENKQLK 167 55667888999******************************************************************************** PP K-box 96 kkl 98 +k+ Potri.012G132600.3 168 TKV 170 996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.441 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.3E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.31E-40 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 1.7E-32 | 2 | 83 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.8E-27 | 86 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.399 | 86 | 182 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MGRGKVVLER IENKISRQVT FSKRRNGLLK KAYELSLLCD AEVALIIFSS HGKLFEFSSI 60 DMNSILQRYR QCCYSTQDTN IPEEGSHNLY QEVSRLRAKC ETLQRSQRNF LGEDLEPLAF 120 KELEKIEKQL DKTLSQARQR KTQLLFDKME ELRLKEQELE EENKQLKTKV FFFLDLAHIY 180 KSHEM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-22 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 2e-22 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 2e-22 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 2e-22 | 1 | 69 | 1 | 69 | MEF2C |
6byy_A | 2e-22 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 2e-22 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 2e-22 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 2e-22 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_A | 2e-22 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 2e-22 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 2e-22 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 2e-22 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during ovule development in the inner and outer integuments. Not detected in young panicles. {ECO:0000269|PubMed:12395189, ECO:0000269|PubMed:19820190}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the floral meristem. Highly expressed in lodicules. Expressed in palea and pistil. Weakly expressed in carpels, empty glumes and stamens. Not detected in lemmas. {ECO:0000269|PubMed:10444103, ECO:0000269|PubMed:19820190}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Regulates floral organ identity and floral meristem determinacy. May be involved in the control of flowering time. {ECO:0000269|PubMed:19820190, ECO:0000269|Ref.8}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.012G132600.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006377087.1 | 1e-118 | truncated transcription factor CAULIFLOWER A isoform X1 | ||||
Swissprot | Q6EU39 | 5e-73 | MADS6_ORYSJ; MADS-box transcription factor 6 | ||||
TrEMBL | U5FXL4 | 1e-117 | U5FXL4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s14010.1 | 5e-83 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 1e-58 | AGAMOUS-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Potri.012G132600.3 |
Entrez Gene | 7482158 |