PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.012G132000.1 | ||||||||
Common Name | POPTR_0012s14080g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 241aa MW: 27438.2 Da PI: 9.3663 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.4 | 2.2e-12 | 72 | 124 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++++h +Er+RR+++ + ++ Lr llP + ++K s ++ + v+YIk+Lq Potri.012G132000.1 72 KKMMHRNIERQRRQEMTTLYASLRALLPLEF--IKGKRSISDHMNESVNYIKYLQ 124 6899*************************65..*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.62E-14 | 68 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.29E-10 | 71 | 128 | No hit | No description |
PROSITE profile | PS50888 | 13.554 | 71 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-9 | 72 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-10 | 72 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-4 | 77 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0090575 | Cellular Component | RNA polymerase II transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MFPLHQGDEL CFNISSDPHQ QHNIPQDLIL ARYAALQGSD TTNKMENDRR RFLISMDSNH 60 EVARDHSKNN NKKMMHRNIE RQRRQEMTTL YASLRALLPL EFIKGKRSIS DHMNESVNYI 120 KYLQKKIKEL SAKRDGLKKS PNLSFDSPSG SSNKYSPISP VTLQPYPGGI EVVFDSDFRG 180 QDSPLSRVLQ VLLEEGISVV NCVSTKVNER LFHTVQTEVN DPACLNLSEL RQKLTLRVVS 240 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.012G132000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002318856.1 | 1e-179 | transcription factor bHLH118 | ||||
Swissprot | Q9STJ6 | 1e-45 | BH126_ARATH; Transcription factor bHLH126 | ||||
TrEMBL | B9I4H5 | 1e-178 | B9I4H5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s14080.1 | 1e-178 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 | Representative plant | OGRP1638 | 8 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51790.1 | 3e-48 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.012G132000.1 |
Entrez Gene | 7482162 |