PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.012G117500.1

Common Name

POPTR_0012s11820g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Trihelix

Protein Properties

Length: 356aa MW: 39719.7 Da PI: 8.3571

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.012G117500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	53.5	6.5e-17	19	111	2	86
trihelix 2 WtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 Wt +e+++Liea+r ++er +++ + +W++v ++++++ + rs++qC++kw+nl ++ykk+++ e+k +++ +++ + + Potri.012G117500.1 19 WTVSETMVLIEAKRMDDERRMKRSdsaegrskPTELRWKWVEDYCWKQECLRSQNQCNDKWDNLMRDYKKVRDYERKIAETGERNGGSYWK 109 ***********96666655422233333338899***************************************98888888777777 PP trihelix 85 le 86 le Potri.012G117500.1 110 LE 111 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.957	11	83	IPR017877	Myb-like domain
Pfam	PF13837	3.0E-11	18	95	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MMADQGGKSL IREYKKGNWT VSETMVLIEA KRMDDERRMK RSDSAEGRSK PTELRWKWVE 60 DYCWKQECLR SQNQCNDKWD NLMRDYKKVR DYERKIAETG ERNGGSYWKL EKNERKERNL 120 PSNMLPQIYE ELVEVVERRG GQQRMLTAAG GSGSNPNTSY VVERPITDVQ PSVLPPLLQH 180 QVSAAPTPAL PLPPPCPPPS QQPQAQPPPP IQFPEPFPTL VLIGLVPHFH VLEMCDSSDS 240 DTSEYSNSPA KRRRRGGGGG EGTSGGTASA STSHEVGTAI SKSASIIAEA IQACDEREER 300 RHRDLLSLHE RRLKIEESKT EINRQGISGL VDAINKLANS ILALASHKNQ SSGPK*

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MMADQGGKSL IREYKKGNWT VSETMVLIEA KRMDDERRMK RSDSAEGRSK PTELRWKWVE  60
DYCWKQECLR SQNQCNDKWD NLMRDYKKVR DYERKIAETG ERNGGSYWKL EKNERKERNL  120
PSNMLPQIYE ELVEVVERRG GQQRMLTAAG GSGSNPNTSY VVERPITDVQ PSVLPPLLQH  180
QVSAAPTPAL PLPPPCPPPS QQPQAQPPPP IQFPEPFPTL VLIGLVPHFH VLEMCDSSDS  240
DTSEYSNSPA KRRRRGGGGG EGTSGGTASA STSHEVGTAI SKSASIIAEA IQACDEREER  300
RHRDLLSLHE RRLKIEESKT EINRQGISGL VDAINKLANS ILALASHKNQ SSGPK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.11666	0.0	bud

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.012G117500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC208485	0.0	AC208485.1 Populus trichocarpa clone JGIACSB253-H05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024438062.1	0.0	protein enabled homolog isoform X1
TrEMBL	A0A2K1YCD0	0.0	A0A2K1YCD0_POPTR; Uncharacterized protein
STRING	POPTR_0012s11820.1	1e-180	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6804	32	42
Representative plant	OGRP1881	16	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	9e-57	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Potri.012G117500.1
Entrez Gene	18103878