PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.012G103500.1 | ||||||||
Common Name | POPTR_0012s10530g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 253aa MW: 28710.9 Da PI: 6.522 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.2 | 8.2e-50 | 14 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrF+Pt+eelv +yLk+k+ + +l++ +vi+ev+++k++Pw+Lp e+e yfFs+++ ky++g+r nra +sgyWkatg d++ Potri.012G103500.1 14 LPPGFRFQPTEEELVFQYLKRKILSWPLPA-SVIPEVNVCKYDPWELPGD---MEQERYFFSNKEAKYPNGNRVNRASSSGYWKATGLDRQ 100 79****************************.99***************54...46799********************************* PP NAM 92 vlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s+ ++++vg+kktLvfy+g+ap+g++tdWvmheyrl Potri.012G103500.1 101 IVSSswkNNHVVGMKKTLVFYRGKAPHGSRTDWVMHEYRL 140 ***98988899***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-55 | 10 | 188 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.597 | 14 | 188 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.5E-25 | 15 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MENFNFVRDG MSGLPPGFRF QPTEEELVFQ YLKRKILSWP LPASVIPEVN VCKYDPWELP 60 GDMEQERYFF SNKEAKYPNG NRVNRASSSG YWKATGLDRQ IVSSSWKNNH VVGMKKTLVF 120 YRGKAPHGSR TDWVMHEYRL VNLGVETTDS NFPQTENSAQ ASYYYIFYAT QNSSFQMDKW 180 VVCRIFLKNK GAATTEITET RTNDNVGGTQ PRLFDFMGRD EIVFDSASSA CSSSSSLAGI 240 SSNEQDHEQS ST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-46 | 14 | 192 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-46 | 14 | 192 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-46 | 14 | 192 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-46 | 14 | 192 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-46 | 14 | 192 | 17 | 169 | NAC domain-containing protein 19 |
4dul_B | 3e-46 | 14 | 192 | 17 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.012G103500.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP770013 | 0.0 | KP770013.1 Populus tomentosa trans-cinnamate 4-monooxygenase (Potri.015G102100) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024438680.1 | 1e-166 | NAC domain-containing protein 83 isoform X1 | ||||
Swissprot | Q9FY93 | 2e-74 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | A0A2K1YBR1 | 1e-165 | A0A2K1YBR1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s10530.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF704 | 34 | 139 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 3e-76 | NAC domain containing protein 83 |
Link Out ? help Back to Top | |
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Phytozome | Potri.012G103500.1 |
Entrez Gene | 7454584 |
Publications ? help Back to Top | |||
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