PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.012G072500.1 | ||||||||
Common Name | POPTR_0012s07450g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 369aa MW: 41341.5 Da PI: 5.8069 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.3 | 8.3e-14 | 14 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.........TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.........kgRtlkqcksrwqkyl 48 rg WT+eEd + + v+++G+g+W++++++ + R++k+c++rw +yl Potri.012G072500.1 14 RGLWTAEEDAKMLAHVAKHGTGNWTAVPKKAAfhkrecfagLQRCGKSCRLRWTNYL 70 788****************************************************97 PP | |||||||
2 | Myb_DNA-binding | 43.7 | 6.3e-14 | 78 | 118 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++T++E+e ++++++ G++ W+ Ia+ ++ gRt++++k++w+ Potri.012G072500.1 78 SFTPQEEEMIIRLHAAIGSR-WSIIAQQLP-GRTDNDVKNYWN 118 79******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.6E-24 | 5 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.686 | 9 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.87E-29 | 11 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-10 | 13 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-12 | 14 | 70 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.55E-9 | 17 | 70 | No hit | No description |
PROSITE profile | PS51294 | 22.574 | 71 | 125 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-24 | 74 | 125 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-13 | 75 | 123 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-12 | 78 | 118 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.68E-10 | 78 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MVRPPCCDKL NVKRGLWTAE EDAKMLAHVA KHGTGNWTAV PKKAAFHKRE CFAGLQRCGK 60 SCRLRWTNYL RPDLKHDSFT PQEEEMIIRL HAAIGSRWSI IAQQLPGRTD NDVKNYWNAR 120 LRKKLSEMGI DPVTHKPFSK ILADYGNIGG LVKYGSRIGS LSRGLKNVFT LKPEQYPFTP 180 EGMSNINSHL MTTTVPPKME SNQECFLNIM YNNDANNNHS LDLLDQLQAI RLVTEASSTC 240 TAYQTIPAPC ILDESSTSFS WCDFLLEDEY LPGDHPQAEQ ENAAEFSSKD LTNQTQNPNV 300 MIPQSFQSNT EVNAGVNGMD LALQSNTGSD DQVASSSSQH SSFVETIMDG ESKIFLDFPN 360 LLEEIFYY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-27 | 14 | 125 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.012G072500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024437685.1 | 0.0 | transcription factor MYB35 isoform X1 | ||||
TrEMBL | A0A2K1YA82 | 0.0 | A0A2K1YA82_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s07450.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2942 | 34 | 74 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 3e-74 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.012G072500.1 |
Entrez Gene | 7484764 |