PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G070900.3
Common NamePOPTR_0012s07270g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 284aa    MW: 32477.7 Da    PI: 4.4113
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G070900.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.72.2e-1955108356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k++++t +q++ Le+ Fe ++++  e++ +LAk lgL+ rqV +WFqNrRa++k
  Potri.012G070900.3  55 KKRRLTVDQVQFLERSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 108
                         56689************************************************9 PP
2HD-ZIP_I/II128.72.5e-4154145192
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         ekkrrl+ +qv++LE+sFe e+kLeperK +la++Lglqprqva+WFqnrRAR+ktkqlEkdye+L+++y+ lk++ ++L ke+e+L++e+
  Potri.012G070900.3  54 EKKRRLTVDQVQFLERSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEVLQSSYNGLKADYDNLFKEKEKLKAEV 144
                         69**************************************************************************************998 PP

         HD-ZIP_I/II  92 k 92 
                         +
  Potri.012G070900.3 145 N 145
                         6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-2037112IPR009057Homeodomain-like
PROSITE profilePS5007117.32950110IPR001356Homeobox domain
SMARTSM003892.8E-1953114IPR001356Homeobox domain
CDDcd000866.71E-1855111No hitNo description
PfamPF000461.0E-1655108IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-1957117IPR009057Homeodomain-like
PRINTSPR000311.1E-58190IPR000047Helix-turn-helix motif
PROSITE patternPS00027085108IPR017970Homeobox, conserved site
PRINTSPR000311.1E-590106IPR000047Helix-turn-helix motif
PfamPF021832.0E-16110151IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MAFDLWCINN IGSRSMMSFA DVHQANGSTR PFFRPYDHED NGDDDLDEYF HQPEKKRRLT  60
VDQVQFLERS FEVENKLEPE RKIQLAKDLG LQPRQVAIWF QNRRARWKTK QLEKDYEVLQ  120
SSYNGLKADY DNLFKEKEKL KAEVNLLTNE LLLKEKEKGS SELSDKDALS QEPPKKAIAD  180
SASEGEVSKT STVACQQEDI SSAKSDMFDS DSPHFADGVH SSLLEAGDSS HVFEPDQSDL  240
SQDEEDNLSK SLLPPYVFPK LEDGDYSDPP ASFEDHAFWC WSY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102110RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.53460.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G070900.3
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1478220.0EF147822.1 Populus trichocarpa clone WS0125_E07 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002317992.20.0homeobox-leucine zipper protein HAT5
TrEMBLB9I3080.0B9I308_POPTR; HD-ZIP family protein
STRINGPOPTR_0012s07270.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-44homeobox 1