PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.012G070900.2 | ||||||||
Common Name | POPTR_0012s07270g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 300aa MW: 33305.8 Da PI: 4.5435 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.6 | 2.4e-19 | 89 | 142 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ Fe ++++ e++ +LAk lgL+ rqV +WFqNrRa++k Potri.012G070900.2 89 KKRRLTVDQVQFLERSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 142 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.5 | 2.8e-41 | 88 | 179 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ +qv++LE+sFe e+kLeperK +la++Lglqprqva+WFqnrRAR+ktkqlEkdye+L+++y+ lk++ ++L ke+e+L++e+ Potri.012G070900.2 88 EKKRRLTVDQVQFLERSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEVLQSSYNGLKADYDNLFKEKEKLKAEV 178 69**************************************************************************************998 PP HD-ZIP_I/II 92 k 92 + Potri.012G070900.2 179 N 179 6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.84E-20 | 71 | 146 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.329 | 84 | 144 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.8E-19 | 87 | 148 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.97E-18 | 89 | 145 | No hit | No description |
Pfam | PF00046 | 1.1E-16 | 89 | 142 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-19 | 91 | 151 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.2E-5 | 115 | 124 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 119 | 142 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.2E-5 | 124 | 140 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.1E-16 | 144 | 185 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 300 aa Download sequence Send to blast |
MAACGGGGGG SNPNLSVLVQ SQRGPCAASQ PLEAFFLSGS SPSFLGSRSM MSFADVHQAN 60 GSTRPFFRPY DHEDNGDDDL DEYFHQPEKK RRLTVDQVQF LERSFEVENK LEPERKIQLA 120 KDLGLQPRQV AIWFQNRRAR WKTKQLEKDY EVLQSSYNGL KADYDNLFKE KEKLKAEVNL 180 LTNELLLKEK EKGSSELSDK DALSQEPPKK AIADSASEGE VSKTSTVACQ QEDISSAKSD 240 MFDSDSPHFA DGVHSSLLEA GDSSHVFEPD QSDLSQDEED NLSKSLLPPY VFPKLEDAC* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 136 | 144 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pth.5346 | 0.0 | bud |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.012G070900.2 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF147822 | 0.0 | EF147822.1 Populus trichocarpa clone WS0125_E07 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002317992.2 | 0.0 | homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | B9I308 | 0.0 | B9I308_POPTR; HD-ZIP family protein | ||||
STRING | POPTR_0012s07270.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G01470.1 | 3e-43 | homeobox 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.012G070900.2 |
Entrez Gene | 7484754 |