PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G059900.1
Common NamePOPTR_0012s05660g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 395aa    MW: 44987.4 Da    PI: 8.4642
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G059900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.51.1e-381262733130
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaesssssas 83 
                          k+drhski T++g+RdRR+Rls+++a++fFdLqd+L fdk+skt+eWLl qak +ik+l +           +++sas++          
  Potri.012G059900.1 126 SKRDRHSKINTAQGPRDRRMRLSLKVAREFFDLQDKLRFDKASKTVEWLLIQAKNEIKKLSSGsphmnysgsdGTKSASST---------- 206
                         69**********************************************************999555555554422222111.......... PP

                 TCP  84 nsssg......................kaaksaakskksqksaasalnlakesrakarararertrekm 130
                         ++  +                      + + +++ +++++++++ ++ +akesr+karararert+ek 
  Potri.012G059900.1 207 SE--RemlteinietttkgrnvskgrsSPCVKKERTRRASSRKTPFNPFAKESREKARARARERTKEKY 273
                         11..1123333344555566677777777888887778888888899********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-40126272IPR005333Transcription factor, TCP
PROSITE profilePS5136932.259127185IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137012.397255272IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MFPLSYNAND AISCSDQQAY NMPLFSDIIS YPKQDVPPPL SLCLPSPFIP CDQQEFEDHL  60
IFLQQNYDLF FQEQPLRATA TSTNLSQSTV VNNMADSNKS AVIELAGICN KKSNNSTDQI  120
LRKRSSKRDR HSKINTAQGP RDRRMRLSLK VAREFFDLQD KLRFDKASKT VEWLLIQAKN  180
EIKKLSSGSP HMNYSGSDGT KSASSTSERE MLTEINIETT TKGRNVSKGR SSPCVKKERT  240
RRASSRKTPF NPFAKESREK ARARARERTK EKYLCSRRID KLKFSEESSN NELNQFAGCW  300
DTPLETGDQE SGTHNFNPSL EVQLAEVDVA IYHEREKLRT PEGMIDENLV IMGKYWSPSF  360
LNNLHNTGTP DQEHQFSDFQ YKTWDQACTI GSMC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G059900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024437904.10.0uncharacterized protein LOC7487090
TrEMBLA0A2K1Y9K20.0A0A2K1Y9K2_POPTR; Uncharacterized protein
STRINGPOPTR_0012s05660.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.15e-19TCP domain protein 12