PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G031200.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 200aa    MW: 23698.3 Da    PI: 10.1033
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G031200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.13.6e-07137175444
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                         ++++E++l+++  ++ G + W++Ia +++ gR ++++  +w
  Potri.012G031200.1 137 MSEQEEDLIYRMYRLVGER-WDLIAGRIP-GRKAEEIERFW 175
                         589****************.*********.********999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.5E-5133181IPR001005SANT/Myb domain
CDDcd001675.94E-6137175No hitNo description
SuperFamilySSF466894.34E-6138178IPR009057Homeodomain-like
PfamPF002491.5E-6138176IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-9138176IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MVGKVAEITP TSFPSKFERG FHFSTYFRLS TTSLQVHCMP KSQQTYIFFF GWVAYVLLLQ  60
HKFGLLDLRL LQNSICINSF PSTLGNYYLS LFSCPAFSAS FLMESMDRRR RRRRKQAKIN  120
NSESEEVSSI EWEFIDMSEQ EEDLIYRMYR LVGERWDLIA GRIPGRKAEE IERFWIMKHR  180
EGFAEKRRLH SKAKSKTYR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107113RRRRRRR
2108114RRRRRRK
3108115RRRRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.178795e-97bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G031200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7233932e-89KP723393.1 Populus tremula x Populus tremuloides clone INRA 353-38 R3 MYB repressor protein (MYB179) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002317748.31e-116transcription factor TRY
TrEMBLA0A3N7GMS11e-115A0A3N7GMS1_POPTR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35832757
Representative plantOGRP4207823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53200.17e-30MYB_related family protein