PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.012G024200.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 168aa MW: 19226.6 Da PI: 4.5189 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 54.7 | 3.4e-17 | 25 | 131 | 18 | 128 |
NAM 18 yLkkkvegkkleleevikevdiykvePwdLp.kkvka.eekewyfFskrdkkyatgkrknratksgyWkatgk.dkevlskkgelvglkkt 105 y +k+ g++l++ +vi+++d+y + P +Lp +k+ e +ew+fFs+r+k + a + gy + +++ +g+ vg kt Potri.012G024200.2 25 YRLRKILGQQLPA-DVIPTTDVYASSPDKLPlDDFKGgEANEWFFFSNRSKDDD-----TIALDGGYYAIDPEgAGPITW-EGKIVGYVKT 108 77899********.99***************7566662556*******998754.....567889999854442688888.999******* PP NAM 106 LvfykgrapkgektdWvmheyrl 128 L fy+g+ p+g++t+W+++e+r+ Potri.012G024200.2 109 LNFYQGSLPNGTETEWMVEEFRI 131 *********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 20.281 | 9 | 161 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.89E-21 | 24 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.5E-7 | 29 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
IYLLIQFNFP SPYIHYRAMH KSLLYRLRKI LGQQLPADVI PTTDVYASSP DKLPLDDFKG 60 GEANEWFFFS NRSKDDDTIA LDGGYYAIDP EGAGPITWEG KIVGYVKTLN FYQGSLPNGT 120 ETEWMVEEFR INPEFVPINN NDDRSTREKI ENLVACKISR VQPEPEW* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.012G024200.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209184 | 1e-159 | AC209184.1 Populus trichocarpa clone POP031-J16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002318469.1 | 1e-100 | NAC domain-containing protein 86 isoform X1 | ||||
Refseq | XP_024438638.1 | 1e-100 | NAC domain-containing protein 86 isoform X2 | ||||
TrEMBL | A0A3N7FW08 | 6e-99 | A0A3N7FW08_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s03130.1 | 1e-100 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17260.1 | 2e-15 | NAC domain containing protein 86 |
Link Out ? help Back to Top | |
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Phytozome | Potri.012G024200.2 |