PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G023900.1
Common NamePOPTR_0012s03100g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 172aa    MW: 19130.5 Da    PI: 4.2627
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G023900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM81.81.4e-25141362128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgk.d 89 
                          +G++F+P +++l+v+yLk+k+ g++l++ +vi+++d+y + P +Lp   +k++   ew+fFs+r+k       +  a + gy     +  
  Potri.012G023900.1  14 LAGYKFSPDNDDLIVYYLKRKILGQQLPA-DVITTTDVYASSPDKLPlDDFKGGVPnEWFFFSTRSKDD-----NIIALDGGYYAIDPEgA 98 
                         68***************************.99***************6666665545*******98864.....34578899998544426 PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++  +g++vg  ktL fy+g++p+g++t+W+++e+r+
  Potri.012G023900.1  99 GPITW-EGKVVGYVKTLNFYQGSSPNGTETEWMVEEFRV 136
                         88888.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-297163IPR003441NAC domain
PROSITE profilePS5100529.49913165IPR003441NAC domain
PfamPF023657.5E-1515136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MASGGQALNV PVLLAGYKFS PDNDDLIVYY LKRKILGQQL PADVITTTDV YASSPDKLPL  60
DDFKGGVPNE WFFFSTRSKD DNIIALDGGY YAIDPEGAGP ITWEGKVVGY VKTLNFYQGS  120
SPNGTETEWM VEEFRVNPEF VPINNNDRST REKIENLVAC KISRVQPEPE W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-18813613140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G023900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2091841e-154AC209184.1 Populus trichocarpa clone POP031-J16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318469.11e-111NAC domain-containing protein 86 isoform X1
RefseqXP_024438638.11e-111NAC domain-containing protein 86 isoform X2
TrEMBLB9I2371e-122B9I237_POPTR; Uncharacterized protein
STRINGPOPTR_0012s03100.11e-123(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14452718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.16e-22NAC domain containing protein 86