PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G007500.1
Common NamePOPTR_0012s00760g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 609aa    MW: 68017.5 Da    PI: 4.595
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G007500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1707.5e-53111381128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lp GfrF+P+deelv++yL++k++gk+ ++ +vi+e+d++k+ePwdLp  + +++++ ew+fF++ d+ky++g+r+nrat++gyWkatgkd
  Potri.012G007500.1  11 LPLGFRFRPSDEELVNYYLRHKINGKDDKV-RVIREIDVCKWEPWDLPglSIIENKDPEWFFFCPLDRKYPNGSRQNRATNAGYWKATGKD 100
                         699************************999.99***************6336777888********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++++s +++l+g+kktLvfy+grapkg++t+Wv+heyr+
  Potri.012G007500.1 101 RKIKS-GNRLIGMKKTLVFYTGRAPKGKRTNWVVHEYRA 138
                         *****.999****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-614161IPR003441NAC domain
PROSITE profilePS5100557.111161IPR003441NAC domain
PfamPF023655.7E-2712137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002230Biological Processpositive regulation of defense response to virus by host
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009814Biological Processdefense response, incompatible interaction
GO:0010200Biological Processresponse to chitin
GO:0070417Biological Processcellular response to cold
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MAVFSLNLNS LPLGFRFRPS DEELVNYYLR HKINGKDDKV RVIREIDVCK WEPWDLPGLS  60
IIENKDPEWF FFCPLDRKYP NGSRQNRATN AGYWKATGKD RKIKSGNRLI GMKKTLVFYT  120
GRAPKGKRTN WVVHEYRATE EELDGTKPGQ SAFVLCRLFK KQDESIESPN CDEAEATVSS  180
PTTAQSSPEV TQSDQPLTEA SPANTTTSEV VAPVEFPSCS VGVSEGGDQT ADLPASEEEL  240
QLEEALNWLF DSPPQALDYE LFPPVHEQVQ EAVGSSSMFN HGNNDLSSSN RGLQSHNVGN  300
ETDDYTSEFI DSILKQPDEL FYEVPSFQNN SSFPSESLFR GSLLRVVEDN VSYSGSDVDM  360
EPIRIEQGFQ GAVFPEGNID EKPSSTLLYD SNVHQQPIYL GSLQNGSYAL QSVASISATD  420
QLNTLNKPSN STNEVGGSDT NWNGIRTRVH NPRNRQFGRN FNTQGDAPRR LRLQCKLQVQ  480
PIQFSTKSED FNSGEGELEY ECIVTKEIKV SETNAMDEDS YTNAMDEQLK PTLVKVSETI  540
KFSEELIPNN GTAVKNNRSM LSKVSFMFSK ASSACDSIWS ITMFRVAVLA VLFAVSVSRC  600
RYFFLDTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-471016516169NO APICAL MERISTEM PROTEIN
1ut4_B3e-471016516169NO APICAL MERISTEM PROTEIN
1ut7_A3e-471016516169NO APICAL MERISTEM PROTEIN
1ut7_B3e-471016516169NO APICAL MERISTEM PROTEIN
3swm_A4e-471016519172NAC domain-containing protein 19
3swm_B4e-471016519172NAC domain-containing protein 19
3swm_C4e-471016519172NAC domain-containing protein 19
3swm_D4e-471016519172NAC domain-containing protein 19
3swp_A4e-471016519172NAC domain-containing protein 19
3swp_B4e-471016519172NAC domain-containing protein 19
3swp_C4e-471016519172NAC domain-containing protein 19
3swp_D4e-471016519172NAC domain-containing protein 19
4dul_A3e-471016516169NAC domain-containing protein 19
4dul_B3e-471016516169NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.118620.0bud
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator essential for the anti-viral defense called virus basal resistance response pathway (PubMed:11041886, PubMed:15629774, PubMed:18785827, PubMed:24418554). Not involved in HRT-mediated hypersensitive response (HR) and resistance to TCV (PubMed:18785827). Binds DNA non specifically (PubMed:15629774). Activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). {ECO:0000250|UniProtKB:Q9SCK6, ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774, ECO:0000269|PubMed:18785827, ECO:0000269|PubMed:24418554}.; FUNCTION: (Microbial infection) Compromised function in defense response pathway when interacting with the invading viral capsid protein (CP) of turnip crinkle virus (TCV) due to abnormal subcellular localization. {ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00398DAPTransfer from AT3G49530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G007500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by bacterial pathogens type III effector proteins (TTEs). {ECO:0000269|PubMed:16553893}.; INDUCTION: (Microbial infection) Accumulates 2 days post infection with turnip crinkle virus (TCV) (PubMed:24418554). {ECO:0000269|PubMed:24418554}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002317831.30.0NAC domain-containing protein 91
SwissprotQ9LKG81e-99NAC91_ARATH; NAC domain-containing protein 91
TrEMBLA0A2K1Y6Z10.0A0A2K1Y6Z1_POPTR; Uncharacterized protein
STRINGPOPTR_0012s00760.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55513353
Representative plantOGRP9409612
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.22e-99TCV-interacting protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ben Daniel BH, et al.
    Identification of novel transcriptional regulators of Zat12 using comprehensive yeast one-hybrid screens.
    Physiol Plant, 2016. 157(4): p. 422-41
    [PMID:26923089]
  3. Li Y, et al.
    The interaction between Turnip crinkle virus p38 and Cucumber mosaic virus 2b and its critical domains.
    Virus Res., 2016. 222: p. 94-105
    [PMID:27288723]