PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.012G001400.3 | ||||||||
Common Name | POPTR_0012s01610g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 260aa MW: 29609.5 Da PI: 9.4904 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 182.2 | 1.3e-56 | 17 | 143 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+++yL kkv + ++++ ++i +vd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke Potri.012G001400.3 17 LPPGFRFHPTDEELISHYLYKKVLDINFSA-RAIGDVDLNKSEPWELPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKE 106 79**************************99.89***************888999************************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++ +++lvg+kktLvfykgrapkgekt+Wvmheyrle Potri.012G001400.3 107 IYR-GKSLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 143 ***.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-65 | 14 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.089 | 17 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.7E-30 | 18 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MENISGLGKE DDDKMDLPPG FRFHPTDEEL ISHYLYKKVL DINFSARAIG DVDLNKSEPW 60 ELPWKAKMGE KEWYFFCVRD RKYPTGLRTN RATEAGYWKA TGKDKEIYRG KSLVGMKKTL 120 VFYKGRAPKG EKTNWVMHEY RLEGKFSAHN LPKTAKNEWV ICRVFQKSSA GKKTYISGLV 180 RLGSFGNEFS PYGLPPLTDS SPSNGKIRPV AESAYVPCFS NLSDDQRNQQ DTTDSFNNHL 240 FAVSSNPSEV LFQFKTAQF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-56 | 5 | 173 | 2 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-56 | 5 | 173 | 2 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-56 | 5 | 173 | 2 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-56 | 5 | 173 | 2 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-56 | 5 | 173 | 2 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-56 | 5 | 173 | 2 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.012G001400.3 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002318383.2 | 0.0 | NAC domain-containing protein 100 | ||||
Swissprot | Q9FLJ2 | 1e-135 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | B9I557 | 0.0 | B9I557_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s01610.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-137 | NAC domain containing protein 100 |
Link Out ? help Back to Top | |
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Phytozome | Potri.012G001400.3 |
Entrez Gene | 7489822 |
Publications ? help Back to Top | |||
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