PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.012G001400.2

Common Name

POPTR_0012s01610g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 293aa MW: 32744.8 Da PI: 9.0496

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.012G001400.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	110.4	2.1e-34	2	76	54	129
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ +++lvg+kktLvfykgrapkgekt+Wvmheyrle Potri.012G001400.2 2 GEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYR-GKSLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 76 578************************************.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	42.03	1	100	IPR003441	NAC domain
SuperFamily	SSF101941	9.02E-40	2	100	IPR003441	NAC domain
Pfam	PF02365	2.5E-16	6	75	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MGEKEWYFFC VRDRKYPTGL RTNRATEAGY WKATGKDKEI YRGKSLVGMK KTLVFYKGRA 60 PKGEKTNWVM HEYRLEGKFS AHNLPKTAKN EWVICRVFQK SSAGKKTYIS GLVRLGSFGN 120 EFSPYGLPPL TDSSPSNGKI RPVAESAYVP CFSNLSDDQR NQQDTTDSFN NHLFAVSSNP 180 SEVFPRIPLL NSFYSPQAVA ASGNLQYPGS VSIQDRSVLK ALIENQGSNM KQQSSKLERD 240 MASVSQDSAA DMNNEISSVI SNLEAGKRSF DEQEAPPCTL VQSMDLDCFW NY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-33	1	106	68	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-33	1	106	68	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-33	1	106	68	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-33	1	106	68	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-33	1	106	71	174	NAC domain-containing protein 19
3swm_B	2e-33	1	106	71	174	NAC domain-containing protein 19
3swm_C	2e-33	1	106	71	174	NAC domain-containing protein 19
3swm_D	2e-33	1	106	71	174	NAC domain-containing protein 19
3swp_A	2e-33	1	106	71	174	NAC domain-containing protein 19
3swp_B	2e-33	1	106	71	174	NAC domain-containing protein 19
3swp_C	2e-33	1	106	71	174	NAC domain-containing protein 19
3swp_D	2e-33	1	106	71	174	NAC domain-containing protein 19
4dul_A	2e-33	1	106	68	171	NAC domain-containing protein 19
4dul_B	2e-33	1	106	68	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.012G001400.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002318383.2	0.0	NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-115	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2K1Y6L3	0.0	A0A2K1Y6L3_POPTR; Uncharacterized protein
STRING	POPTR_0012s01610.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-118	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	Potri.012G001400.2
Entrez Gene	7489822

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]