PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.011G169300.2 | ||||||||
Common Name | POPTR_0011s17230g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 709aa MW: 76572.3 Da PI: 6.2833 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.7 | 4.1e-32 | 293 | 350 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +D ynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ +++++ei+Y+g Hnh+k Potri.011G169300.2 293 EDAYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSH-EGHITEIIYKGAHNHPK 350 7****************************************.***************85 PP | |||||||
2 | WRKY | 103.8 | 9.7e-33 | 504 | 562 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+ Potri.011G169300.2 504 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERASHDLKSVITTYEGKHNHD 562 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 23.066 | 287 | 351 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-25 | 290 | 351 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.1E-28 | 290 | 351 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-35 | 292 | 350 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-24 | 293 | 349 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.2E-37 | 489 | 564 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-28 | 496 | 564 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.664 | 499 | 564 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-37 | 504 | 563 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.3E-25 | 505 | 562 | IPR003657 | WRKY domain |
PROSITE pattern | PS00138 | 0 | 575 | 585 | IPR023828 | Peptidase S8, subtilisin, Ser-active site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0030010 | Biological Process | establishment of cell polarity | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 709 aa Download sequence Send to blast |
MAGIDDNVAI IGDWVPPSPS PRAFFSAMLG DDINSRTIPE SPGEKRNEGL YLGQPEQMAT 60 GNSEKKDGAQ TSGVQLTELG TFSEQKSNFR GGLVERIAAR AGFNAPRLNT ESIRSTESSM 120 NPEIRSPYLT IPPGLSPTTL LESPVFLSNL AQPSPTTGKF SFFPNGNTKN STVGSDPPDK 180 SKETFFDNID SSSFAFKPMG ESGSFFLGGT SKSHGVEPAK TQFESRNSLH FRAEFSKLTT 240 EKDNGCITVA DQRTFDTVAG NAEHSSPLAE QQDEEGDQRA SEDSMAAGGT PSEDAYNWRK 300 YGQKQVKGSE YPRSYYKCTH PNCPVKKKVE RSHEGHITEI IYKGAHNHPK PPPNRRSATG 360 SMDTQLDIPE QAGPQVGAVN DSVWAGTQKG TAAGTPDWRN DNVEVSSSAS GGLGPEFGNP 420 SSSVQGQSGT PFESADAVDA SSTFSNDEDD DRATHGSVGY DGEGEESESK RRKVETYATE 480 MSGATRAIRE PRVVVQTTSE VDILDDGYRW RKYGQKVVKG NPNPRSYYKC TSAGCTVRKH 540 VERASHDLKS VITTYEGKHN HDVPAARNSN HVNSGTSNAT PAQAGIAVQT QVHRPEASQV 600 HNSMTSRFER PPAFGSFRQQ LGPSAGFSFG MNQPGFANMG MAGLGPGQPR MPVMPMHPYL 660 AQQRAVNEMG LMMPKGEAKV EPVTEANMSL SSNNPTVYQQ IMSRLPQM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 9e-37 | 293 | 565 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 9e-37 | 293 | 565 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.1046 | 0.0 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Low expression in senescent leaves (PubMed:11722756). Expressed in both the unfertilized egg cell and the pollen tube (PubMed:21316593). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:21316593}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00071 | PBM | Transfer from AT5G56270 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.011G169300.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN117933 | 0.0 | JN117933.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor (WRKY37) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024437144.1 | 0.0 | probable WRKY transcription factor 2 isoform X2 | ||||
Swissprot | Q9FG77 | 0.0 | WRKY2_ARATH; Probable WRKY transcription factor 2 | ||||
TrEMBL | U5G0P4 | 0.0 | U5G0P4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s17230.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 0.0 | WRKY DNA-binding protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Potri.011G169300.2 |
Entrez Gene | 18103574 |
Publications ? help Back to Top | |||
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