PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G169300.1
Common NamePOPTR_0011s17230g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 726aa    MW: 78446.3 Da    PI: 6.1552
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G169300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.74.2e-32310367260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         +D ynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ +++++ei+Y+g Hnh+k
  Potri.011G169300.1 310 EDAYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSH-EGHITEIIYKGAHNHPK 367
                         7****************************************.***************85 PP
2WRKY103.71e-32521579159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+
  Potri.011G169300.1 521 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERASHDLKSVITTYEGKHNHD 579
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.066304368IPR003657WRKY domain
SuperFamilySSF1182902.35E-25307368IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-28307368IPR003657WRKY domain
SMARTSM007741.6E-35309367IPR003657WRKY domain
PfamPF031061.9E-24310366IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.4E-37506581IPR003657WRKY domain
SuperFamilySSF1182901.57E-28513581IPR003657WRKY domain
PROSITE profilePS5081138.664516581IPR003657WRKY domain
SMARTSM007741.5E-37521580IPR003657WRKY domain
PfamPF031066.5E-25522579IPR003657WRKY domain
PROSITE patternPS001380592602IPR023828Peptidase S8, subtilisin, Ser-active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MAGIDDNVAI IGDWVPPSPS PRAFFSAMLG DDINSRTIPE SPGEKRNEGL YLGQPEQMAT  60
GNSEKKDGAQ TSGVQLTELG TFSEQKSNFR GGLVERIAAR AGFNAPRLNT ESIRSTESSM  120
NPEIRSPYLT IPPGLSPTTL LESPVFLSNL AQPSPTTGKF SFFPNGNTKN STVGSDPPDK  180
SKETFFDNID SSSFAFKPMG ESGSFFLGGT SKQSFPSIDV SVHSENAFQS HGVEPAKTQF  240
ESRNSLHFRA EFSKLTTEKD NGCITVADQR TFDTVAGNAE HSSPLAEQQD EEGDQRASED  300
SMAAGGTPSE DAYNWRKYGQ KQVKGSEYPR SYYKCTHPNC PVKKKVERSH EGHITEIIYK  360
GAHNHPKPPP NRRSATGSMD TQLDIPEQAG PQVGAVNDSV WAGTQKGTAA GTPDWRNDNV  420
EVSSSASGGL GPEFGNPSSS VQGQSGTPFE SADAVDASST FSNDEDDDRA THGSVGYDGE  480
GEESESKRRK VETYATEMSG ATRAIREPRV VVQTTSEVDI LDDGYRWRKY GQKVVKGNPN  540
PRSYYKCTSA GCTVRKHVER ASHDLKSVIT TYEGKHNHDV PAARNSNHVN SGTSNATPAQ  600
AGIAVQTQVH RPEASQVHNS MTSRFERPPA FGSFRQQLGP SAGFSFGMNQ PGFANMGMAG  660
LGPGQPRMPV MPMHPYLAQQ RAVNEMGLMM PKGEAKVEPV TEANMSLSSN NPTVYQQIMS  720
RLPQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36310582878Probable WRKY transcription factor 4
2lex_A1e-36310582878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.10460.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Low expression in senescent leaves (PubMed:11722756). Expressed in both the unfertilized egg cell and the pollen tube (PubMed:21316593). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:21316593}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G169300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1179330.0JN117933.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor (WRKY37) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006378014.10.0probable WRKY transcription factor 2 isoform X1
RefseqXP_024437142.10.0probable WRKY transcription factor 2 isoform X1
RefseqXP_024437143.10.0probable WRKY transcription factor 2 isoform X1
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLU5G0P40.0U5G0P4_POPTR; Uncharacterized protein
STRINGPOPTR_0011s17230.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95243443
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]