PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G147400.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 590aa    MW: 63913.8 Da    PI: 7.8591
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G147400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix96.72.1e-30100184187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW++qe++aL+++r+em+ ++r++ lk+plWe+vs+k++e g++r++k+Ckek+en++k+yk++keg+ +r++++s  +++f+qlea
  Potri.011G147400.2 100 RWPRQETHALLQIRSEMDAAFRDATLKGPLWEDVSRKLAEMGYKRNAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFTQLEA 184
                         8*********************************************************************866665..*******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122032.42E-2899164No hitNo description
PROSITE profilePS500906.6299157IPR017877Myb-like domain
PfamPF138374.2E-2199185No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MQQGGGERGS SQSQYGVPHQ QEGDVPITTP TSAALATHMQ QQVVEEASPI SSRPPATAAT  60
TSGVMNLDEF IRLSGSGGAE EDIVAGEDAD RTGGIASGNR WPRQETHALL QIRSEMDAAF  120
RDATLKGPLW EDVSRKLAEM GYKRNAKKCK EKFENVHKYY KRTKEGRAGR QDGKSYRFFT  180
QLEALHNTTG SGGASASVIN MSGAAPQQIF TTTTSSLDVA PVSVGIPMPI SSSVRIPPPS  240
SRVLQPASNI GSMFPPDLGA TVAAAAAGAG PVGISFSSNG SSSSPSSEDD DDDEEEDEEL  300
LGGQPSATAA GTSRKRKRAS LSSAKGETHR MMEFFEGLMK QLMQKQEAMQ QRFLEAIEKR  360
EQDRMIRDEA WKRQEMARLS REHEIMAQER AISASRDAAI VAFLQKITGQ TIHLPTPVSM  420
APPFSLPPPP PPPEPQPVQV TPLFTVSTQP PPPPQLQPMP QSQVTPQQNI QQPQPLPQQQ  480
HHHHQQGHRQ HQLPISSDIV MAVPEQQIIP QEIGSGGGSG SEPASSRWPK PEVLALIKLR  540
SGLETKYQEA GPKGPLWKKF QQECKGWAIK EVPKDAKKNG RISTSTSRK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142150KRNAKKCKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G147400.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1494300.0AC149430.1 Populus trichocarpa clone Pop1-116F13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024436869.10.0LOW QUALITY PROTEIN: trihelix transcription factor GTL1
TrEMBLA0A2K1YKF90.0A0A2K1YKF9_POPTR; Uncharacterized protein
STRINGPOPTR_0001s45870.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.12e-50GT-2-like 1