PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G121300.1
Common NamePOPTR_0011s12190g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 463aa    MW: 51734.3 Da    PI: 4.3152
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G121300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM691.3e-21171481128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkd 89 
                         l pG+rF+P deelv ++L +k+++  ++++  ++++++y ++P ++  + ++ + ++++fF+  ++k+++++ +++ a   ++W+   kd
  Potri.011G121300.1  17 LLPGYRFNPYDEELVRFFLYPKLTNPCFTTSAPVRDCNLYACQPLQIWnTFHRIHGEDVFFFTDLKRKSPNSNVSRKiAGGPATWHREDKD 107
                         579************************999888**************734445588899**********998877774555778******* PP

                 NAM  90 kevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++v+++   + +++ lkk + +  +++p+   ++W+m ey+l
  Potri.011G121300.1 108 HQVCVQidkNYSVTALKKGFSYR-NTQPHQPGCSWMMYEYSL 148
                         ****9977666679999999986.7888889*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-2211163IPR003441NAC domain
PROSITE profilePS5100524.94417163IPR003441NAC domain
PfamPF023653.9E-1319148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MAISQSQTLA TLTPIQLLPG YRFNPYDEEL VRFFLYPKLT NPCFTTSAPV RDCNLYACQP  60
LQIWNTFHRI HGEDVFFFTD LKRKSPNSNV SRKIAGGPAT WHREDKDHQV CVQIDKNYSV  120
TALKKGFSYR NTQPHQPGCS WMMYEYSLPS LSQVTVLCQL RRKDDDDTHQ STQKNKKRKR  180
ADADGVDDAA NTISQKARVD QHDQQQHNMG FYRASETVSE EVVNGVRFKD FESFYRENVQ  240
DFDSCEMAAN SITSTTGHVS PTTVSTLNPD ENFKPFEVFC IDNDGEPAAN EDDDFHQKIL  300
ELLNPTVFSD EADVVPAIEV APIQADGVQA TQVGSNLIEV VCIDNDGEAA AKEDDDLRQE  360
ILELLNSNGC SDKADVVPAI EAAPVQVDGV QATQVGSILI ESFTSEVVDH HPDSEVSDDS  420
SLSSDWIESF PPAFAQANPT CGLIQENKIQ MIPNPFFMDC FY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160179RRKDDDDTHQSTQKNKKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G121300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002317507.30.0NAC domain-containing protein 13
TrEMBLA0A2K1YJ480.0A0A2K1YJ48_POPTR; Uncharacterized protein
STRINGPOPTR_0011s12190.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13633523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.12e-13NAC domain containing protein 86