PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G087900.3
Common NamePOPTR_0011s09030g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 413aa    MW: 44710.3 Da    PI: 7.6735
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G087900.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY23.21.4e-0791107218
                         --SS-EEEEEEE--TT- CS
                WRKY   2 dDgynWrKYGqKevkgs 18 
                         dDgy+WrKYGqK+vkg+
  Potri.011G087900.3  91 DDGYKWRKYGQKHVKGK 107
                         8**************95 PP
2WRKY106.91e-33226284159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Potri.011G087900.3 226 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 284
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508119.30585137IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.3E-688107IPR003657WRKY domain
SuperFamilySSF1182903.79E-788119IPR003657WRKY domain
SMARTSM007740.008890118IPR003657WRKY domain
PfamPF031062.0E-491107IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.8E-38211286IPR003657WRKY domain
SuperFamilySSF1182901.96E-29218286IPR003657WRKY domain
PROSITE profilePS5081138.825221286IPR003657WRKY domain
SMARTSM007743.1E-39226285IPR003657WRKY domain
PfamPF031062.2E-26227284IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MVSADMNHQR SAQCVKVQSQ CQSQSFPSSP SVKGEMAVCT NELTLSTPLH MVTSGSSVPA  60
EVDSDELNQM GLSSSGLRAS QSGSAPTVSS DDGYKWRKYG QKHVKGKIIY KGTHDHPKPQ  120
PSRRYASGSG LFMLEERFDK FSSLPSQDDK SPGAYGQVSH AIEPDGAPEL SPGTTNDDTG  180
EGAEDDKDPF SKRRRLDAGG FDVTPVIKPI REPRVVVQTQ SEVDILDDGY RWRKYGQKVV  240
RGNPNPRSYY KCTNAGCPVR KHVERASHDP KAVITTYEGK HNHDVPTART NSHDTAGPSA  300
VNGTSRTRPD KNETISLDLG VGISSTSENL SSDQQQALHA ELVRFENQSS SGSSFRIVHA  360
SPIAAYYGVL NGGMNQYGSR QIPSEGRSIE IPPLNRSSYP YPQNVGSLLT GP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-37217286877Probable WRKY transcription factor 4
2lex_A1e-37217286877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191195KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G087900.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2080470.0AC208047.1 Populus trichocarpa clone JGIACSB05-H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024437369.10.0probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV01e-129WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A3N7HES60.0A0A3N7HES6_POPTR; Uncharacterized protein
STRINGPOPTR_0001s37260.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-129WRKY family protein