PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G087900.2
Common NamePOPTR_0011s09030g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 443aa    MW: 48241.2 Da    PI: 7.2138
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G087900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.9e-3191148260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         dDgy+WrKYGqK+vkgsefprsYY+Ct+++C+vkk  e+s+ d++++ei+Y+g+H+h+k
  Potri.011G087900.2  91 DDGYKWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFECSH-DGQITEIIYKGTHDHPK 148
                         8***************************************9.***************85 PP
2WRKY106.71.1e-33256314159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Potri.011G087900.2 256 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 314
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.18285149IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.0E-2688149IPR003657WRKY domain
SuperFamilySSF1182904.71E-2488149IPR003657WRKY domain
SMARTSM007743.4E-3290148IPR003657WRKY domain
PfamPF031061.6E-2391147IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.7E-38241316IPR003657WRKY domain
SuperFamilySSF1182902.22E-29248316IPR003657WRKY domain
PROSITE profilePS5081138.825251316IPR003657WRKY domain
SMARTSM007743.1E-39256315IPR003657WRKY domain
PfamPF031062.4E-26257314IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MVSADMNHQR SAQCVKVQSQ CQSQSFPSSP SVKGEMAVCT NELTLSTPLH MVTSGSSVPA  60
EVDSDELNQM GLSSSGLRAS QSGSAPTVSS DDGYKWRKYG QKHVKGSEFP RSYYKCTHPN  120
CEVKKLFECS HDGQITEIIY KGTHDHPKPQ PSRRYASGSG LFMLEERFDK FSSLPSQDDK  180
SPGAYGQVSH AIEPDGAPEL SPGTTNDDTG EGAEDDKDPF SKRRRLDAGG FDVTPVIKPI  240
REPRVVVQTQ SEVDILDDGY RWRKYGQKVV RGNPNPRSYY KCTNAGCPVR KHVERASHDP  300
KAVITTYEGK HNHDVPTART NSHDTAGPSA VNGTSRTRPD KNETISLDLG VGISSTSENL  360
SSDQQQALHA ELVRFENQSS SGSSFRIVHA SPIAAYYGVL NGGMNQYGSR QIPSEGRSIE  420
IPPLNRSSYP YPQNVGSLLT GP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-3791316877Probable WRKY transcription factor 4
2lex_A4e-3791316877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221225KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G087900.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2080470.0AC208047.1 Populus trichocarpa clone JGIACSB05-H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024437369.10.0probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV01e-161WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A3N7FUJ40.0A0A3N7FUJ4_POPTR; Uncharacterized protein
STRINGPOPTR_0001s37260.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-160WRKY family protein