PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G071700.1
Common NamePOPTR_0011s06820g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 407aa    MW: 46266.6 Da    PI: 5.0242
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G071700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.94.3e-35141052102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl k ye+++d++ ++++sws+n++sfvv+++ efa+++Lp++Fkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+ +
  Potri.011G071700.1  14 FLAKAYEMVDDPSSDSIVSWSQNNKSFVVWNPPEFARDLLPRFFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFANEDFIRGQPH 95 
                         9***************************************************************9998.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         l+++i+r+k 
  Potri.011G071700.1  96 LMKNIHRRKP 105
                         *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.3E-38498IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.71E-369103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.5E-6210103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.1E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MDESQGTSNS LPPFLAKAYE MVDDPSSDSI VSWSQNNKSF VVWNPPEFAR DLLPRFFKHN  60
NFSSFIRQLN TYGFRKIDPE QWEFANEDFI RGQPHLMKNI HRRKPVHSHS MQNLQGQGSN  120
LLTDSERQSM KDDIEKLKRD KQALILELQK QEQERKGFEM QIEGLKEKLQ QTECIQQTIV  180
SFVARVLPKP GLALNIMPQL EGRDRKRRLP RIGYLYSEAS NEDNQMVTSQ ALSRENADSN  240
SVALLNMEQF EQLESSLTFW ENMVHDIGQT YNYNNSTIEM DDSTSGAQSP AISCVHLNVD  300
FRPKSPGIDM NSEPSAAVAP EPVSPKEQLA GTAPTVATGV NDVFWEQFLT ENPGSTNAQE  360
VQSERKDSDG RKGEIKPVDP GKFWWNMRNV NNLTEQMGHL TPAERT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-24410320129Heat shock factor protein 1
5d5v_B7e-24410320129Heat shock factor protein 1
5d5v_D7e-24410320129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203208DRKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G071700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139820.0KP013982.1 UNVERIFIED: Populus simonii heat shock transcription factor A4b3-like (HsfA4b3) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316809.10.0heat stress transcription factor A-4c
SwissprotO494031e-140HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLB9I1G80.0B9I1G8_POPTR; Uncharacterized protein
STRINGPOPTR_0011s06820.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Representative plantOGRP52351020
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-139heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]